Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_B23
         (465 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    22   2.8  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          22   2.8  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    22   3.7  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    22   3.7  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   6.5  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   6.5  

>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = +2

Query: 356 HNIQDHYNFSYNTFTHTNKSKN 421
           HN  ++ N +YN + + N + N
Sbjct: 91  HNNNNYNNNNYNNYNYNNNNYN 112


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 9/34 (26%), Positives = 16/34 (47%)
 Frame = +2

Query: 314 HVKLI*NKF*LIHSHNIQDHYNFSYNTFTHTNKS 415
           H+K+      ++H HN+ D+ +   N      KS
Sbjct: 402 HIKVFVVNKDILHEHNVDDNEDHDENMIIPPKKS 435


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 7/25 (28%), Positives = 13/25 (52%)
 Frame = +2

Query: 356 HNIQDHYNFSYNTFTHTNKSKNFLF 430
           HN    YN++ N + + N +K   +
Sbjct: 90  HNNNYKYNYNNNNYNNNNYNKKLYY 114


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 7/25 (28%), Positives = 13/25 (52%)
 Frame = +2

Query: 356 HNIQDHYNFSYNTFTHTNKSKNFLF 430
           HN    YN++ N + + N +K   +
Sbjct: 90  HNNNYKYNYNNNNYNNNNYNKKLYY 114


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = -2

Query: 362 CCVNVLVKIYFILILRGYIAFKFLDVDMNY 273
           CC      IY   + R +  F FL +++ Y
Sbjct: 349 CCQGRATAIYIDKVSRFFFPFSFLILNVVY 378


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 7/23 (30%), Positives = 11/23 (47%)
 Frame = -1

Query: 288 CRYELYQIIIFYIRSHYDQTHCL 220
           C +  +    + IR H D T C+
Sbjct: 605 CCWHCFNCTQYQIRDHKDVTQCI 627


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,160
Number of Sequences: 438
Number of extensions: 2251
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12436029
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)