Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_B21
         (219 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0410 + 3661304-3661383,3661494-3661673,3661757-3661870,366...    26   3.6  
03_01_0545 - 4086692-4087591                                           26   3.6  
09_06_0188 - 21441377-21442201                                         26   4.7  

>08_01_0410 +
           3661304-3661383,3661494-3661673,3661757-3661870,
           3661975-3662133,3662193-3662243,3662838-3663018,
           3663102-3663228,3663322-3663431,3663529-3663667,
           3663767-3663876,3664002-3664071,3664247-3664320,
           3664458-3664553,3664682-3664777,3665041-3665168,
           3665422-3665656,3665743-3665910,3666274-3666381,
           3666468-3666617,3666905-3667015,3667118-3667297,
           3667427-3667555,3667819-3667914,3668108-3668293,
           3668431-3668603,3668720-3668921
          Length = 1150

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 8/31 (25%)
 Frame = +1

Query: 7   GNLPLNYQH--C-----NPNHETV-TDHRCS 75
           GN PLN+QH  C     NP+ +T+ TDH C+
Sbjct: 192 GNAPLNWQHQLCKNPRPNPDIKTLFTDHSCA 222


>03_01_0545 - 4086692-4087591
          Length = 299

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -3

Query: 157 SSVPFKFSLGXVRLFRVSRGEGSCSSAKNSGD 62
           SS     S+G      + RG+G CSS+K   D
Sbjct: 29  SSTTLSASIGVASGCNIGRGKGGCSSSKGVKD 60


>09_06_0188 - 21441377-21442201
          Length = 274

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 125 RPQAEFERNARIIAQDSDVKEDSYRFNY 208
           +PQA   R  +    DSD ++DS+ + Y
Sbjct: 9   KPQARMSRRRQQPGSDSDGEDDSFLYRY 36


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,735,176
Number of Sequences: 37544
Number of extensions: 65232
Number of successful extensions: 143
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 14,793,348
effective HSP length: 52
effective length of database: 12,841,060
effective search space used: 256821200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)