Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_B21
         (219 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L23646-14|AAN84801.2|  517|Caenorhabditis elegans C. elegans RET...    26   3.2  
AC006633-1|AAK68374.1|  113|Caenorhabditis elegans Hypothetical ...    26   4.2  
U40797-1|AAB37554.2|  250|Caenorhabditis elegans Hypothetical pr...    25   7.3  

>L23646-14|AAN84801.2|  517|Caenorhabditis elegans C. elegans RETR-1
           protein, isoformc protein.
          Length = 517

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 43  NHETVTDHRCSWRCYSCLRPCL 108
           N  T T +RC + C   L+PC+
Sbjct: 180 NEYTSTTYRCRYICRCALKPCM 201


>AC006633-1|AAK68374.1|  113|Caenorhabditis elegans Hypothetical
           protein F35B3.3 protein.
          Length = 113

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +1

Query: 64  HRCSWRCYSCLRPCLP*TIAPXP 132
           H+C+W+CY     C    I P P
Sbjct: 15  HKCNWKCYLPNNNCKLRQIKPVP 37


>U40797-1|AAB37554.2|  250|Caenorhabditis elegans Hypothetical
           protein C28C12.11 protein.
          Length = 250

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +1

Query: 10  NLPLNYQHCNPNHETVTDHRCSWRCYS 90
           NL  N    +P+H+    HR  W  YS
Sbjct: 62  NLKTNDHLIDPSHQVTICHRLKWSHYS 88


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,887,545
Number of Sequences: 27780
Number of extensions: 56873
Number of successful extensions: 137
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 12,740,198
effective HSP length: 52
effective length of database: 11,295,638
effective search space used: 225912760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)