Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_B21
         (219 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   0.75 
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    20   3.0  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    19   5.3  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.2 bits (45), Expect = 0.75
 Identities = 5/13 (38%), Positives = 8/13 (61%)
 Frame = +1

Query: 55  VTDHRCSWRCYSC 93
           V   +C W C++C
Sbjct: 600 VAGEQCCWHCFNC 612



 Score = 21.4 bits (43), Expect = 1.3
 Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
 Frame = +1

Query: 31  HC-NPNHETVTDHRCSWRCYSCLRPCLP 111
           HC N     + DH+   +C SC +  +P
Sbjct: 608 HCFNCTQYQIRDHKDVTQCISCRQGTVP 635


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 20.2 bits (40), Expect = 3.0
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -3

Query: 112 RVSRGEGSCSSAKNSG 65
           R+ RG GS  +  N+G
Sbjct: 306 RIHRGRGSVHNGSNNG 321


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 19.4 bits (38), Expect = 5.3
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +2

Query: 113 EQSHRPQAEFERNARIIAQDSDVKEDSYRFNY 208
           E S RP++    NA ++      K+ S  F+Y
Sbjct: 471 EISTRPKSNTVENACVLKNTEIFKDKSDWFDY 502


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 49,690
Number of Sequences: 438
Number of extensions: 634
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 46
effective length of database: 126,195
effective search space used:  3281070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)