Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_B20
         (414 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      23   1.0  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   2.4  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          20   9.6  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      20   9.6  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    20   9.6  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 23.4 bits (48), Expect = 1.0
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = -3

Query: 244 VDLKNNNGVGHFVSHLVEFGPDHLAGSAPSRH 149
           +D  +++G+ H         PDH    +PS H
Sbjct: 23  LDNNDSSGIPHSAESSASNSPDHYERFSPSTH 54


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -2

Query: 47  NNKIDRVEHAAIIP 6
           NN IDR+E  A +P
Sbjct: 368 NNSIDRIESNAFLP 381


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 68  MSIHIKDFDDLKTRLSEAGDKLVVID 145
           M  +++   DL TR+S A D   V+D
Sbjct: 319 MQKYVQMIHDLHTRISTAIDLGYVVD 344


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 68  MSIHIKDFDDLKTRLSEAGDKLVVID 145
           M  +++   DL TR+S A D   V+D
Sbjct: 319 MQKYVQMIHDLHTRISTAIDLGYVVD 344


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +2

Query: 65  KMSIHIKDFDDLKTRLS 115
           K  +   ++DD+KT LS
Sbjct: 293 KKEVEDMEYDDIKTELS 309


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,009
Number of Sequences: 438
Number of extensions: 1951
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10503195
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)