Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_B19
         (528 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.09c |snf59||SWI/SNF complex subunit Snf59|Schizosacchar...    27   2.3  
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos...    27   2.3  
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce...    25   7.0  
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C...    25   7.0  
SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|ch...    25   7.0  
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po...    25   9.2  
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch...    25   9.2  

>SPBC26H8.09c |snf59||SWI/SNF complex subunit
           Snf59|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 515

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 16/75 (21%), Positives = 30/75 (40%)
 Frame = +2

Query: 5   EDQNLLEGVEHFDKTQMKHTTTEEKNSLXXXXXXXXXXXXNKFLNGIESFDPTKLKHTET 184
           +D N+LE  EH D ++ + T  ++ N L            +  L+ +   +  K   +  
Sbjct: 66  DDLNMLEEPEHHDNSKKESTNLDDSNMLEEPKHHDNSNKESTNLDDLNMSEEPKHHDSSN 125

Query: 185 CEKNPLPTKDVIEQE 229
            E   L   ++ E E
Sbjct: 126 KESTNLDNSNMDESE 140


>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
           Plc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 899

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
 Frame = -3

Query: 352 DNANGPIICRG--LTSSLKYGD 293
           D  NGP++C G   TS +K+ D
Sbjct: 491 DGPNGPVVCHGHTFTSMIKFND 512


>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 128 KFLNGIESFDPTKLKHTETCEKN 196
           K L G +S DP  L+  + CE+N
Sbjct: 311 KELEGSDSIDPILLEKIDVCEEN 333


>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
           Cct2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 13/53 (24%), Positives = 29/53 (54%)
 Frame = -3

Query: 286 RDIVVARVKLIRGSDSSGFLLLDDIFSWEWILFASFSVLQLCRVEAFDAVQEL 128
           R+ + A+V+ I+  + + F+    I++W   LFA   ++ +   + FD ++ L
Sbjct: 268 REKMKAKVEKIKSHNINCFINRQLIYNWPEQLFADAGIMSIEHAD-FDGIERL 319


>SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 654

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 131 FLNGIESFDPTKLKHTETCEKNPL 202
           F NG+ SFD   +K+  T  K+P+
Sbjct: 174 FENGVCSFDNMTVKYVSTSSKSPV 197


>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 293 IAVF*TRCKSSTYYRPVCV 349
           +AVF   C++ TY R +CV
Sbjct: 188 LAVFWASCEAGTYMRTLCV 206


>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
           Psm3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1194

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +3

Query: 189 KRIHSQLKMSSSKRNPLESLPRISLTLATTISR 287
           +RI+S++   S KRN LESL  +   +AT I +
Sbjct: 876 QRINSEI---SDKRNELESLEELQHEVATRIEQ 905


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,901,597
Number of Sequences: 5004
Number of extensions: 36188
Number of successful extensions: 100
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)