Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_B19
         (528 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF026213-7|AAB71308.2|  151|Caenorhabditis elegans Tetra thymosi...    45   3e-05
Z81082-3|CAB03095.2|  603|Caenorhabditis elegans Hypothetical pr...    29   2.1  
AF039710-4|AAD32273.1|  347|Caenorhabditis elegans Serpentine re...    28   4.8  

>AF026213-7|AAB71308.2|  151|Caenorhabditis elegans Tetra thymosin
           (four thymosin repeatprotein) protein 1 protein.
          Length = 151

 Score = 45.2 bits (102), Expect = 3e-05
 Identities = 24/76 (31%), Positives = 38/76 (50%)
 Frame = +2

Query: 29  VEHFDKTQMKHTTTEEKNSLXXXXXXXXXXXXNKFLNGIESFDPTKLKHTETCEKNPLPT 208
           +EHFD T++  T  +EK  L             +  + I +F    LK TET EKN LP+
Sbjct: 54  IEHFDSTKLHSTPVKEKIVLPSADDIKQEKQHLELTDKINNFPSENLKKTETIEKNVLPS 113

Query: 209 KDVIEQEKSA*ITSSY 256
              + +EK+  + +S+
Sbjct: 114 PTDVAREKTLQMAASF 129



 Score = 38.3 bits (85), Expect = 0.003
 Identities = 23/61 (37%), Positives = 30/61 (49%)
 Frame = +2

Query: 50  QMKHTTTEEKNSLXXXXXXXXXXXXNKFLNGIESFDPTKLKHTETCEKNPLPTKDVIEQE 229
           ++K   T EKN L             + ++ IE FD TKL  T   EK  LP+ D I+QE
Sbjct: 23  ELKKVETTEKNVLPTKEDVAEEKQHVERIHEIEHFDSTKLHSTPVKEKIVLPSADDIKQE 82

Query: 230 K 232
           K
Sbjct: 83  K 83


>Z81082-3|CAB03095.2|  603|Caenorhabditis elegans Hypothetical
           protein F42G4.3a protein.
          Length = 603

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 14/55 (25%), Positives = 25/55 (45%)
 Frame = +2

Query: 32  EHFDKTQMKHTTTEEKNSLXXXXXXXXXXXXNKFLNGIESFDPTKLKHTETCEKN 196
           ++F+ T    TTT   NSL               L   E +DP+K++ +++  +N
Sbjct: 209 DYFNNTATTATTTTSSNSLNENNNSNKYGNKETVLQWSEPYDPSKIRRSQSPIRN 263


>AF039710-4|AAD32273.1|  347|Caenorhabditis elegans Serpentine
           receptor, class h protein99 protein.
          Length = 347

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 19/66 (28%), Positives = 31/66 (46%)
 Frame = +3

Query: 321 PLHIIGPFALSILNVSFFLNTAL*PLPFRSFRMDASPYHLVCRKYKSFLHNF*RYYIMCI 500
           P  II  F+L +  ++FF+  A  P+  +S +      HL C  +   L  F   Y++  
Sbjct: 32  PTDIIQIFSLPLQILAFFIILAKSPVQMKSMKWPLFYNHLFCSIFDLILCTFSTIYLILP 91

Query: 501 LY*GVF 518
           +  GVF
Sbjct: 92  ML-GVF 96


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,309,248
Number of Sequences: 27780
Number of extensions: 194808
Number of successful extensions: 406
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 404
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1038911524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)