Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_B18
(574 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_05_0014 + 18392622-18392834,18393064-18393147,18393709-183937... 70 2e-12
10_01_0232 + 2456449-2456652,2456814-2456897,2459113-2459201,245... 52 2e-07
06_01_0976 - 7576334-7579090,7581001-7581150,7581236-7581850 36 0.030
03_02_0124 - 5749183-5749773,5750628-5751160,5751191-5753035,575... 33 0.12
11_06_0559 + 24972403-24972445,24972590-24972680,24973911-249740... 31 0.86
07_03_0603 - 19890664-19890823,19891104-19891329,19891498-198916... 30 1.1
06_01_1138 - 9429447-9433868 29 3.5
05_06_0228 + 26570066-26571352 28 6.1
04_01_0502 - 6587068-6587964 27 8.0
>11_05_0014 +
18392622-18392834,18393064-18393147,18393709-18393797,
18393889-18394063,18394370-18394489,18394591-18394677,
18394755-18394826,18395166-18395279,18395387-18395487,
18395576-18395669,18395794-18395961,18396287-18396352,
18396475-18396531,18396708-18396927,18397015-18397151,
18397573-18397641,18397722-18397781,18397927-18397998,
18398171-18398218,18398376-18398495,18398743-18398808,
18399341-18399453,18399821-18399905,18400246-18400356,
18400436-18400531,18401075-18401143,18401235-18401453
Length = 974
Score = 69.7 bits (163), Expect = 2e-12
Identities = 41/132 (31%), Positives = 64/132 (48%), Gaps = 1/132 (0%)
Frame = +3
Query: 174 DFSIGFGYYPGCVGDNREPANRSSGAYIFRPNSTSPEPYRSQARVKRIENGNIRRTVTNV 353
+F + YY G G+ +P ++SGAYIFRPN T P Q + + + +
Sbjct: 603 NFEQKYKYYIGQDGNGSDP--QASGAYIFRPNGTVPIKTDGQVPLTVLRGSILDEVHQQI 660
Query: 354 GDELSIIRTDYLSSNISEINWFVR-ILIDDGVGKDVVLTYKTDILNNGQFYTDSNGRQIL 530
+ I Y + E + V I +DDG GK++ T++ N FYTDS+GR +
Sbjct: 661 NPWIYQINRVYKGKDYVETEFIVGPIPVDDGNGKELSTEVVTNMATNKTFYTDSSGRDFI 720
Query: 531 KRVLNKRPPWNV 566
KR+ + R W +
Sbjct: 721 KRIRDYRSEWKI 732
>10_01_0232 +
2456449-2456652,2456814-2456897,2459113-2459201,
2459245-2459452,2459764-2459883,2460004-2460087,
2460171-2460242,2460342-2460455,2460852-2460952,
2461024-2461117,2461265-2461432,2461539-2461616,
2461908-2461973,2462052-2462108,2462353-2462572,
2462867-2463003,2465379-2465450,2465530-2465577,
2465681-2465806,2465982-2466047,2466508-2466620,
2467348-2467432,2467885-2467980,2468067-2468114,
2468190-2468258,2468393-2468581
Length = 935
Score = 52.4 bits (120), Expect = 2e-07
Identities = 23/46 (50%), Positives = 30/46 (65%)
Frame = +3
Query: 435 DDGVGKDVVLTYKTDILNNGQFYTDSNGRQILKRVLNKRPPWNVTL 572
DD +GK+VV T++ N FYTDSNGR L+RV N R W++ L
Sbjct: 681 DDDIGKEVVTRLTTNMATNKIFYTDSNGRDFLERVRNHRDDWDLNL 726
>06_01_0976 - 7576334-7579090,7581001-7581150,7581236-7581850
Length = 1173
Score = 35.5 bits (78), Expect = 0.030
Identities = 14/29 (48%), Positives = 22/29 (75%)
Frame = +3
Query: 450 KDVVLTYKTDILNNGQFYTDSNGRQILKR 536
K++++ +KTDI N G FY+D NG Q+ +R
Sbjct: 882 KELIVRFKTDIDNQGVFYSDLNGFQMSRR 910
>03_02_0124 -
5749183-5749773,5750628-5751160,5751191-5753035,
5753632-5753820,5753911-5754013,5754087-5754269,
5754392-5754484,5755031-5755219,5756133-5756327
Length = 1306
Score = 33.5 bits (73), Expect = 0.12
Identities = 16/67 (23%), Positives = 31/67 (46%)
Frame = +3
Query: 153 DEPNSSRDFSIGFGYYPGCVGDNREPANRSSGAYIFRPNSTSPEPYRSQARVKRIENGNI 332
D+ N+ ++ +GF Y G + + + + + PNS S P+ Q + +NG +
Sbjct: 714 DDGNNWHEYGVGFPRYFNHQGRDPQMRHFNGKEHSSSPNSVSGAPFERQGEIAVEDNGAV 773
Query: 333 RRTVTNV 353
TN+
Sbjct: 774 EENYTNM 780
>11_06_0559 +
24972403-24972445,24972590-24972680,24973911-24974030,
24974121-24974237,24974745-24974840,24975317-24975610,
24977153-24977258,24977365-24977566,24977671-24977792
Length = 396
Score = 30.7 bits (66), Expect = 0.86
Identities = 14/54 (25%), Positives = 25/54 (46%)
Frame = +3
Query: 195 YYPGCVGDNREPANRSSGAYIFRPNSTSPEPYRSQARVKRIENGNIRRTVTNVG 356
+ PGC +R P R S Y RP + + Q++ K ++ N+ + +G
Sbjct: 45 WIPGCASADRRPRVRQSVLYSDRPKRSQGIRGQVQSKTKSLDEKNVSEVSSELG 98
>07_03_0603 -
19890664-19890823,19891104-19891329,19891498-19891636,
19891849-19891942,19892291-19892311,19892506-19892941,
19893133-19893280,19893369-19893476,19893543-19893659,
19893960-19894016,19894488-19894553,19895140-19895328,
19895410-19895523,19895684-19895766,19895857-19896322,
19896832-19897476
Length = 1022
Score = 30.3 bits (65), Expect = 1.1
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Frame = +3
Query: 345 TNVGDELSIIRTDYLSSNISEINWFVRILID------DGVGKDVVLTYKTDILNNGQFYT 506
T+V E+S ++ +ISE+ +L D K++ +KTD++ + Y
Sbjct: 507 TSVAQEISRLKAPVSEQSISEMKSQTGLLYDWIQETLSDCRKELFSCHKTDMIADITTYQ 566
Query: 507 DSNGRQILKRVLNKRPPWNV 566
+N ++L + L P WN+
Sbjct: 567 FNNIGKVLAQFLQDLPGWNI 586
>06_01_1138 - 9429447-9433868
Length = 1473
Score = 28.7 bits (61), Expect = 3.5
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = +3
Query: 255 IFRPNSTSPEPYRSQARVKRIENGNIRRTVTNVGDELSIIR 377
+F P ST P P QA + +IR V N L IIR
Sbjct: 428 MFPPASTKPPPQSEQAAASTLGEDHIREIVHNHKITLEIIR 468
>05_06_0228 + 26570066-26571352
Length = 428
Score = 27.9 bits (59), Expect = 6.1
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Frame = +3
Query: 48 KEKFVT-DXXXXXXXXXXKYDDIFSKMDEDEM--RMLSDEPNSSRDFSIGFGYYPG 206
KEKF T + ++ +S++D DE+ RML SR + G G YPG
Sbjct: 308 KEKFNTVEEDEPSQNRSAHFEYYWSELDLDELDGRMLFVGRGCSRSYEAGDGRYPG 363
>04_01_0502 - 6587068-6587964
Length = 298
Score = 27.5 bits (58), Expect = 8.0
Identities = 18/54 (33%), Positives = 27/54 (50%)
Frame = +3
Query: 330 IRRTVTNVGDELSIIRTDYLSSNISEINWFVRILIDDGVGKDVVLTYKTDILNN 491
+R + + DE +R LSS ++ IN R+L G DVV+ Y I+ N
Sbjct: 117 VRELTSIMSDEC--LREAELSSEVTRINTAPRVLPCHLEGNDVVIQYSPTIVVN 168
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,694,032
Number of Sequences: 37544
Number of extensions: 268272
Number of successful extensions: 633
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 632
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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