Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_B18
(574 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40948-5|AAA81731.2| 955|Caenorhabditis elegans Hypothetical pr... 50 1e-06
Z75954-6|CAJ55257.1| 1145|Caenorhabditis elegans Hypothetical pr... 40 0.002
Z75954-5|CAB00104.1| 1143|Caenorhabditis elegans Hypothetical pr... 40 0.002
AC025726-9|AAK73924.1| 594|Caenorhabditis elegans Hypothetical ... 29 2.3
AC025726-8|AAT81183.1| 537|Caenorhabditis elegans Hypothetical ... 29 2.3
AF024502-2|AAK77623.1| 591|Caenorhabditis elegans Hypothetical ... 28 5.4
U13643-6|AAL56620.1| 180|Caenorhabditis elegans Hypothetical pr... 27 9.5
L17337-4|ABM74561.1| 217|Caenorhabditis elegans Hypothetical pr... 27 9.5
AC006828-1|AAM48561.2| 55|Caenorhabditis elegans Hypothetical ... 27 9.5
>U40948-5|AAA81731.2| 955|Caenorhabditis elegans Hypothetical
protein F55D10.1 protein.
Length = 955
Score = 50.0 bits (114), Expect = 1e-06
Identities = 35/119 (29%), Positives = 53/119 (44%), Gaps = 3/119 (2%)
Frame = +3
Query: 189 FGYYPGCVGDNREPANRSSGAYIFRPNSTSPEPYRSQARVKRIENGNIRRTVTNVGDELS 368
F YY G + +P SGAYIFRP + P S+ ++ + I V +S
Sbjct: 608 FFYYEGIDSKDDQP----SGAYIFRPKTQQPIALTSKLALEVVPGAIINEVRQKVSPFVS 663
Query: 369 IIRTDYLSSNISEINWFVRIL---IDDGVGKDVVLTYKTDILNNGQFYTDSNGRQILKR 536
N E W V + + + K+ V Y T++ + Q +TDSNGRQ ++R
Sbjct: 664 QQIRLPRGKNYIEFEWIVGPIPKETKNPITKEFVTRYTTEVHSKNQSFTDSNGRQAMER 722
>Z75954-6|CAJ55257.1| 1145|Caenorhabditis elegans Hypothetical protein
F58H1.1b protein.
Length = 1145
Score = 39.5 bits (88), Expect = 0.002
Identities = 20/98 (20%), Positives = 49/98 (50%)
Frame = +3
Query: 243 SGAYIFRPNSTSPEPYRSQARVKRIENGNIRRTVTNVGDELSIIRTDYLSSNISEINWFV 422
+GAY+F P+ + E + + ++ +++ ++L I++T L + I+
Sbjct: 811 AGAYLFLPDGEARELKKQSSDWILVKGEVVQKVFATPNNDLKILQTYTLYQGLPWIDLDN 870
Query: 423 RILIDDGVGKDVVLTYKTDILNNGQFYTDSNGRQILKR 536
+ + ++ L + + + + +F+TD NG Q++KR
Sbjct: 871 EVDVRSKENFELALRFSSSVNSGDEFFTDLNGMQMIKR 908
>Z75954-5|CAB00104.1| 1143|Caenorhabditis elegans Hypothetical protein
F58H1.1a protein.
Length = 1143
Score = 39.5 bits (88), Expect = 0.002
Identities = 20/98 (20%), Positives = 49/98 (50%)
Frame = +3
Query: 243 SGAYIFRPNSTSPEPYRSQARVKRIENGNIRRTVTNVGDELSIIRTDYLSSNISEINWFV 422
+GAY+F P+ + E + + ++ +++ ++L I++T L + I+
Sbjct: 809 AGAYLFLPDGEARELKKQSSDWILVKGEVVQKVFATPNNDLKILQTYTLYQGLPWIDLDN 868
Query: 423 RILIDDGVGKDVVLTYKTDILNNGQFYTDSNGRQILKR 536
+ + ++ L + + + + +F+TD NG Q++KR
Sbjct: 869 EVDVRSKENFELALRFSSSVNSGDEFFTDLNGMQMIKR 906
>AC025726-9|AAK73924.1| 594|Caenorhabditis elegans Hypothetical
protein Y71G12B.23a protein.
Length = 594
Score = 29.1 bits (62), Expect = 2.3
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +3
Query: 102 YDDIFSKMDEDEMRMLSDEPNSS 170
YDD F + DED++ LS +P S
Sbjct: 153 YDDDFEQEDEDDLEWLSSQPGGS 175
>AC025726-8|AAT81183.1| 537|Caenorhabditis elegans Hypothetical
protein Y71G12B.23b protein.
Length = 537
Score = 29.1 bits (62), Expect = 2.3
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +3
Query: 102 YDDIFSKMDEDEMRMLSDEPNSS 170
YDD F + DED++ LS +P S
Sbjct: 153 YDDDFEQEDEDDLEWLSSQPGGS 175
>AF024502-2|AAK77623.1| 591|Caenorhabditis elegans Hypothetical
protein M151.4 protein.
Length = 591
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +3
Query: 360 ELSIIRTDYLSSNISEINWFVRILIDDGVGKDVVLTYKTDILN 488
E+S+ + L + I+E+ VR+L DDG K+ +LN
Sbjct: 83 EISMTENNALEAEINELKQKVRMLTDDGQNKEKQTKELEGVLN 125
>U13643-6|AAL56620.1| 180|Caenorhabditis elegans Hypothetical
protein T07E3.6b protein.
Length = 180
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = -1
Query: 454 SLPTPSSIKILTNQFISLMFELK*SVLIIDSSSPTLVTVRRIF 326
+LP PSS+ + N+FI M L + ++SP L +++
Sbjct: 84 ALPLPSSLNVNMNRFIISMIALLAVFCAVSTASPLLYRAPQMY 126
>L17337-4|ABM74561.1| 217|Caenorhabditis elegans Hypothetical
protein ZK686.4 protein.
Length = 217
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +3
Query: 423 RILIDDGVGKDVVLTYKTDILNNGQFYTD 509
++ +D VGK VV+T T G FY D
Sbjct: 65 KVDLDSKVGKSVVITKATPSAETGGFYCD 93
>AC006828-1|AAM48561.2| 55|Caenorhabditis elegans Hypothetical
protein Y97E10C.1 protein.
Length = 55
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +3
Query: 162 NSSRDFSIGFGYYPGCVGDNREPANRSS 245
N SI F YPG + D P++RSS
Sbjct: 22 NEESTTSIFFDIYPGRIADAHHPSSRSS 49
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,292,611
Number of Sequences: 27780
Number of extensions: 256539
Number of successful extensions: 655
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -