Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_B17
         (391 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote...    26   2.4  
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha...    26   2.4  
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII...    25   3.1  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    25   4.1  
SPBC2G5.02c |||CK2 family regulatory subunit |Schizosaccharomyce...    24   7.2  
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po...    24   7.2  
SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc...    24   7.2  
SPAC6G10.07 |||nuclear cap-binding complex large subunit |Schizo...    24   9.5  
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ...    24   9.5  

>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
           Mug36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1646

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 98  TYQDAVMWYKNLDKLIEYSNLKAAKD 175
           TY+DA      LD ++EY N  A++D
Sbjct: 127 TYEDAPSQLDILDNVVEYMNKTASQD 152


>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 578

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = +2

Query: 26  MDYVSNQAQNYRTNNVIITMGGDFTYQDAVMWYKNLDKLIEYSNLKA 166
           + Y++  + N     V++      T + A+  Y+NL+ LI+ +NLKA
Sbjct: 224 LQYLNGLSDNKSVPRVLVVSP---TRELAIQTYENLNSLIQGTNLKA 267


>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
           complex subunit Taf111|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 979

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = +2

Query: 152 SNLKAAKDGLQMNFMYSTPTCYLKAVRDADPVLPTKQDDFF 274
           +N     DGL +N +++T       + D   V  T Q  FF
Sbjct: 257 ANTSQRNDGLDLNTVFTTNDWEKNIIYDESDVNKTNQSSFF 297


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 3227

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 152 SNLKAAKDGLQMNFMYSTPTCY 217
           SNL A+   +   F+++ PTCY
Sbjct: 543 SNLFASTTNIMSTFIHNEPTCY 564


>SPBC2G5.02c |||CK2 family regulatory subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 254

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 14/55 (25%), Positives = 21/55 (38%)
 Frame = +2

Query: 206 PTCYLKAVRDADPVLPTKQDDFFPYASDPTAYWTGYFTSRPTTKYFEREANNYLQ 370
           PT       DAD +     DD           W  +F SRP  +YF     ++++
Sbjct: 13  PTVTYSTKDDADELF----DDLSSSPLHENVSWISWFCSRPGREYFVEVKEDFIE 63


>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1010

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -1

Query: 76  YYIVCPVVLSLITHVI 29
           YY   P+VLSL+T VI
Sbjct: 230 YYETSPLVLSLVTEVI 245


>SPCP1E11.04c |pal1||membrane associated protein Pal1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 425

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +2

Query: 170 KDGLQMNFMYSTPTCYL--KAVRDADPVLPTKQDDFF 274
           +DG+  + ++++   +L  K  R ADPV+ +  DD F
Sbjct: 20  EDGVYTSSLHNSNNPFLAPKTERVADPVMESMADDLF 56


>SPAC6G10.07 |||nuclear cap-binding complex large subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 780

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 195 IKFICKPSLAAFRLEYSINLSRFLYH 118
           +  I + + A F L+Y  NL+ FLY+
Sbjct: 106 VPLILEKAAAYFCLQYFTNLNSFLYY 131


>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1213

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -2

Query: 288 SLAYGKKSSCFVGRTGSASLTAFK*QVGVEYIKFICKPSLAAFRL 154
           SL   +KS   V       +T+F+  +    I+ ICK S+  FRL
Sbjct: 173 SLYEARKSYFTVALQYVVRVTSFRSSIDFIVIESICKFSIETFRL 217


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,624,470
Number of Sequences: 5004
Number of extensions: 32122
Number of successful extensions: 86
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)