Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_B17
(391 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_05_0014 + 18392622-18392834,18393064-18393147,18393709-183937... 116 9e-27
10_01_0232 + 2456449-2456652,2456814-2456897,2459113-2459201,245... 113 5e-26
06_01_0976 - 7576334-7579090,7581001-7581150,7581236-7581850 58 2e-09
02_05_0015 - 24992253-24993993,24995331-24995695 29 1.7
08_01_0044 + 301981-302826,302972-303580 27 4.0
06_02_0051 - 10957857-10958127,10959791-10960035,10960160-109602... 27 5.3
05_04_0246 + 19350362-19350442,19351250-19351383,19351847-193518... 27 7.0
02_05_1219 + 35011571-35011897,35012008-35013780,35013915-350140... 27 7.0
01_01_0376 + 2926426-2927040,2927150-2927239,2927674-2927892 26 9.2
>11_05_0014 +
18392622-18392834,18393064-18393147,18393709-18393797,
18393889-18394063,18394370-18394489,18394591-18394677,
18394755-18394826,18395166-18395279,18395387-18395487,
18395576-18395669,18395794-18395961,18396287-18396352,
18396475-18396531,18396708-18396927,18397015-18397151,
18397573-18397641,18397722-18397781,18397927-18397998,
18398171-18398218,18398376-18398495,18398743-18398808,
18399341-18399453,18399821-18399905,18400246-18400356,
18400436-18400531,18401075-18401143,18401235-18401453
Length = 974
Score = 116 bits (278), Expect = 9e-27
Identities = 58/128 (45%), Positives = 78/128 (60%)
Frame = +2
Query: 5 EEKIALFMDYVSNQAQNYRTNNVIITMGGDFTYQDAVMWYKNLDKLIEYSNLKAAKDGLQ 184
E+++ F+ QA RTN+V+ TMG DF YQ A W++ +DKLI Y N KDG +
Sbjct: 267 EQRVDDFVAAAIAQANITRTNHVMFTMGTDFKYQYAESWFRQMDKLIHYVN----KDG-R 321
Query: 185 MNFMYSTPTCYLKAVRDADPVLPTKQDDFFPYASDPTAYWTGYFTSRPTTKYFEREANNY 364
+N +YSTP+ Y A + P K +DFFPYA +P AYWTGYFTSRP K + R + Y
Sbjct: 322 VNALYSTPSIYTDAKHAENVPWPLKTNDFFPYADNPNAYWTGYFTSRPALKRYVRVMSGY 381
Query: 365 LQVVKQLQ 388
+QL+
Sbjct: 382 YLAARQLE 389
>10_01_0232 +
2456449-2456652,2456814-2456897,2459113-2459201,
2459245-2459452,2459764-2459883,2460004-2460087,
2460171-2460242,2460342-2460455,2460852-2460952,
2461024-2461117,2461265-2461432,2461539-2461616,
2461908-2461973,2462052-2462108,2462353-2462572,
2462867-2463003,2465379-2465450,2465530-2465577,
2465681-2465806,2465982-2466047,2466508-2466620,
2467348-2467432,2467885-2467980,2468067-2468114,
2468190-2468258,2468393-2468581
Length = 935
Score = 113 bits (272), Expect = 5e-26
Identities = 56/128 (43%), Positives = 79/128 (61%)
Frame = +2
Query: 5 EEKIALFMDYVSNQAQNYRTNNVIITMGGDFTYQDAVMWYKNLDKLIEYSNLKAAKDGLQ 184
+E++ F+ QA RTN+++ TMG DF YQ A W++N+D+LI Y N KDG +
Sbjct: 274 KERVNDFVAAALKQANVTRTNHIMWTMGDDFNYQYAESWFRNMDRLINYVN----KDG-R 328
Query: 185 MNFMYSTPTCYLKAVRDADPVLPTKQDDFFPYASDPTAYWTGYFTSRPTTKYFEREANNY 364
++ +YSTP+ Y A ++ P K DD+FPYA AYWTGYFTSRPT K + R + Y
Sbjct: 329 VHALYSTPSIYTDAKHASNESWPLKYDDYFPYADAKNAYWTGYFTSRPTFKRYIRMISGY 388
Query: 365 LQVVKQLQ 388
+QL+
Sbjct: 389 YLAARQLE 396
>06_01_0976 - 7576334-7579090,7581001-7581150,7581236-7581850
Length = 1173
Score = 58.4 bits (135), Expect = 2e-09
Identities = 39/134 (29%), Positives = 60/134 (44%), Gaps = 19/134 (14%)
Frame = +2
Query: 5 EEKIALFMDYVSNQAQNYRTNNVIITMGGDFTY---QDAVMWYKNLDKLIEYSNLKAAKD 175
+E+ +D ++ YRTN ++I +G DF Y ++A ++N +KL +Y N +
Sbjct: 387 QERAMKLLDQYRKKSTLYRTNTLLIPLGDDFRYVSTEEAEAQFRNYEKLFDYIN---SNP 443
Query: 176 GLQMNFMYSTPTCYLKAVRDAD----------------PVLPTKQDDFFPYASDPTAYWT 307
L+ + T Y +RD P PT DFF YA YW+
Sbjct: 444 HLKAEVKFGTLEDYFSTLRDEAERINYTRPGELVSSELPGFPTLSGDFFTYADRNQDYWS 503
Query: 308 GYFTSRPTTKYFER 349
GY+ SRP K +R
Sbjct: 504 GYYVSRPYFKAVDR 517
>02_05_0015 - 24992253-24993993,24995331-24995695
Length = 701
Score = 28.7 bits (61), Expect = 1.7
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = +2
Query: 215 YLKAVRDADPVLPTKQDDFFPYASDPTAYWTG--YFTSRPTTKYFEREANN 361
+ K V + DP+L KQD YA + W G R TK ERE N+
Sbjct: 320 HAKKVNEMDPLLKPKQD---RYALRTSPQWLGPQIEVIRAATKSIEREVNS 367
>08_01_0044 + 301981-302826,302972-303580
Length = 484
Score = 27.5 bits (58), Expect = 4.0
Identities = 21/77 (27%), Positives = 34/77 (44%)
Frame = +2
Query: 161 KAAKDGLQMNFMYSTPTCYLKAVRDADPVLPTKQDDFFPYASDPTAYWTGYFTSRPTTKY 340
K +DGL + + S PT + + R A+ VL T +AS P A T T
Sbjct: 44 KHGRDGLMLVHLGSVPTLVVSSPRAAEAVLRTHD---LAFASRPRAMVPDIITYGATDSC 100
Query: 341 FEREANNYLQVVKQLQV 391
+ +++ +V K + V
Sbjct: 101 YGPYGDHFRKVRKAVTV 117
>06_02_0051 -
10957857-10958127,10959791-10960035,10960160-10960229,
10960319-10960986
Length = 417
Score = 27.1 bits (57), Expect = 5.3
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = -1
Query: 319 REISGPVRSRVARVREEIVLF 257
REISG +RSR RV+ + V+F
Sbjct: 96 REISGTIRSRHGRVQTKAVVF 116
>05_04_0246 +
19350362-19350442,19351250-19351383,19351847-19351895,
19352503-19352667,19353358-19353414,19353524-19353598
Length = 186
Score = 26.6 bits (56), Expect = 7.0
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = +2
Query: 41 NQAQNYRTNNVIITMGGDFTYQDAVMWYK 127
N + + + GGD Y+D V+W+K
Sbjct: 111 NSRVDVTVGSALDIFGGDLPYKDVVLWHK 139
>02_05_1219 +
35011571-35011897,35012008-35013780,35013915-35014068,
35014158-35014801
Length = 965
Score = 26.6 bits (56), Expect = 7.0
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +2
Query: 161 KAAKDGLQMNFMYSTPTCYLKAVRD 235
KA +DG+++ + P+CY + V D
Sbjct: 47 KAHRDGMRLRLLLFPPSCYARLVLD 71
>01_01_0376 + 2926426-2927040,2927150-2927239,2927674-2927892
Length = 307
Score = 26.2 bits (55), Expect = 9.2
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 199 LNADLLFESCEGRRSRPSYKTGRF 270
LNA+ F +CEG+ + SY RF
Sbjct: 101 LNANTSFFTCEGKLNSTSYNATRF 124
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,986,882
Number of Sequences: 37544
Number of extensions: 190241
Number of successful extensions: 461
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 459
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 660830060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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