Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_B16
         (378 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    25   3.0  
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo...    25   5.2  
SPAC26F1.14c |aif1|SPAC29A4.01c|apoptosis-inducing factor homolo...    24   6.9  
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ...    24   9.1  

>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 25.4 bits (53), Expect = 3.0
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -2

Query: 128 VSPARHLLLQYSVPLPLDVERVPLEQEPQLRGVGPLPQRVP 6
           V+   H LLQ++ P P D   + L+ E Q++  G L   +P
Sbjct: 213 VTKELHQLLQHNTPSPFDTIDLQLKNE-QVQSAGLLVSLLP 252


>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
           Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 963

 Score = 24.6 bits (51), Expect = 5.2
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = +3

Query: 15  LRERADSAELRLLLERNAFDIERKRNAILQEQVSSRGDVSPPRC 146
           +R+ AD  +L L  +R   DIE + N + +       D    RC
Sbjct: 683 MRQMADHPDLVLASKRKTVDIENQENIVCKICDEVAQDAIESRC 726


>SPAC26F1.14c |aif1|SPAC29A4.01c|apoptosis-inducing factor homolog
           Aif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 575

 Score = 24.2 bits (50), Expect = 6.9
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -2

Query: 131 DVSPARHLLLQYSVPLPLDVERVPLEQEPQLRGVG 27
           D S A H++L+    +P DV  +    +P LR +G
Sbjct: 373 DSSKAEHIVLKDGQSIPADVVILAAGVKPNLRYLG 407


>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 817

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 39  ELRLLLERNAFDIERKRNAILQEQVS 116
           E R+ +   + ++ER R + LQEQ S
Sbjct: 193 EQRIAMLEESLEVERSRTSELQEQFS 218


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 577,493
Number of Sequences: 5004
Number of extensions: 7404
Number of successful extensions: 40
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)