Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_B16
         (378 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0868 - 32587618-32587875,32588239-32588318,32588518-325885...    27   3.7  
09_02_0184 - 5485231-5485743                                           27   6.5  

>01_06_0868 -
           32587618-32587875,32588239-32588318,32588518-32588583,
           32589896-32590523
          Length = 343

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 104 LQYSVPLPLDVERVPLEQEPQLRGVGPLP 18
           +Q ++P PL +  V   Q+PQL  + PLP
Sbjct: 300 IQSTLPFPLSLAFVSSVQQPQLMPMPPLP 328


>09_02_0184 - 5485231-5485743
          Length = 170

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -2

Query: 197 AALLGVPEGGGHRVRGEAARRRD 129
           A L+G P+GGG   R    RRRD
Sbjct: 137 AVLVGPPDGGGGVRRRRGGRRRD 159


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,733,255
Number of Sequences: 37544
Number of extensions: 77619
Number of successful extensions: 406
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 406
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 612769692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)