Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_B16
         (378 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY572975-1|AAT77228.1|  580|Caenorhabditis elegans KQT-3 potassi...    27   5.9  
AL032648-2|CAA21699.2|  621|Caenorhabditis elegans Hypothetical ...    27   5.9  
AL032654-6|CAB54465.1|  467|Caenorhabditis elegans Hypothetical ...    26   7.8  

>AY572975-1|AAT77228.1|  580|Caenorhabditis elegans KQT-3 potassium
           channel protein.
          Length = 580

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +3

Query: 24  RADSAELRLLLERNAFDIERKRNAILQEQVSSRGDVSPPRCLAPDSV 164
           R  +A  RL+ +RN+  I     A++   VS    +SP   L+P S+
Sbjct: 523 RTLNALYRLMADRNSLTISPSPPALISRPVSPAACLSPRDQLSPTSI 569


>AL032648-2|CAA21699.2|  621|Caenorhabditis elegans Hypothetical
           protein Y54G9A.3 protein.
          Length = 621

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +3

Query: 24  RADSAELRLLLERNAFDIERKRNAILQEQVSSRGDVSPPRCLAPDSV 164
           R  +A  RL+ +RN+  I     A++   VS    +SP   L+P S+
Sbjct: 564 RTLNALYRLMADRNSLTISPSPPALISRPVSPAACLSPRDQLSPTSI 610


>AL032654-6|CAB54465.1|  467|Caenorhabditis elegans Hypothetical
           protein Y52B11A.4 protein.
          Length = 467

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 15  LRERADSAELRLLLERNAFDIERKRNAILQE 107
           +R+R  +  L  L+  N  D+ERKR    QE
Sbjct: 330 IRDRPGTRNLPTLVAGNKIDLERKRTVTKQE 360


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,454,990
Number of Sequences: 27780
Number of extensions: 47936
Number of successful extensions: 224
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 557037416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)