Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_B16
         (378 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   1.6  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   3.6  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    20   8.4  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +3

Query: 69  FDIERKRNAILQEQVSSRGDVSPP 140
           FDI  K NA+L    S +    PP
Sbjct: 362 FDIATKENAMLLSGRSQKSTTGPP 385


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 3.6
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -2

Query: 113 HLLLQYSVPLPLDVERVPLEQEPQLRGVGPLPQRVPR 3
           H+L    +  PLD   V ++QE Q    G L + + R
Sbjct: 645 HVLAHNDLMSPLDEPAVHIKQEGQSPEGGKLTRLIKR 681


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 20.2 bits (40), Expect = 8.4
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -3

Query: 148 RQRGGETSPRLDTCSC 101
           R  GG++  R D C C
Sbjct: 566 RPIGGDSLERFDFCGC 581


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 42,733
Number of Sequences: 438
Number of extensions: 662
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9176370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)