Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_B14
         (446 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit |Schiz...    25   4.0  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    25   5.3  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   7.0  
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M...    24   9.3  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    24   9.3  

>SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1473

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = +2

Query: 215  RYFGEIVQKVGDDLYAYGSKPIALILKTTGLP 310
            RY  +++ KV + +Y  G +  +++++ TG P
Sbjct: 1343 RYLPKLITKVEEIVYEAGLQKDSIVMRMTGCP 1374


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1687

 Score = 25.0 bits (52), Expect = 5.3
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
 Frame = -2

Query: 274 FTAVSI*IITNFLHNFAEITI*YHRHHSS*L----M*HFKILLNNYAVVPLYNDHFSCIN 107
           FT V   I+   LH++  +T  +HR  S  L    + H + L+  ++   L+   F C+N
Sbjct: 360 FTIVESQILPCVLHSYETLTNVFHRDDSKHLYESAVDHGRRLIMKFSDSELHTFLFHCVN 419

Query: 106 R 104
           +
Sbjct: 420 K 420


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +3

Query: 6    RNQKKCKQFCHIL*PISTYIRFII*FEFHLQFYLFMQLK*SLYNG 140
            R+ ++ K+F         Y++F   FE   + Y+F+Q+  SLY+G
Sbjct: 3969 RHDEEAKRFLDPFKNPPYYVQF---FEIGAKNYMFVQMHHSLYDG 4010


>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 663

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = +2

Query: 236 QKVGDDLYAYGSKPIALILKTTGLPRSQVVD 328
           +++  DL+    KP+  +LK + L +S++ D
Sbjct: 333 EEINMDLFKKTLKPVEQVLKDSNLKKSEIDD 363


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = -3

Query: 429  SKTLFKKPSL*SATISLTEG--SNVAKSNLSSVRRLSTTCDLGKPVVFSIKAIG 274
            + T +   S+ S T   ++G  S+V  S+LSS   LST+  +   V  ++ + G
Sbjct: 856  TSTAYTTDSVTSTTALTSQGPSSSVVSSSLSSTTSLSTSIPVTSSVAPAVTSTG 909


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,841,173
Number of Sequences: 5004
Number of extensions: 35147
Number of successful extensions: 84
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)