Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_B14
         (446 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1303 - 32487174-32487871,32488583-32489123                       28   3.0  
02_03_0026 - 14045653-14045874,14047023-14047215,14047518-140476...    28   3.9  

>04_04_1303 - 32487174-32487871,32488583-32489123
          Length = 412

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +2

Query: 284 LILKTTGL-PRSQVVDSLRTLLKFDLATFEPSVNDMV 391
           L  +  GL P   VVDSLR+ L   LATF P    +V
Sbjct: 15  LFYEAAGLTPFDSVVDSLRSSLGATLATFAPLAGKLV 51


>02_03_0026 - 14045653-14045874,14047023-14047215,14047518-14047618,
            14050145-14050272,14050409-14050502,14050749-14051237,
            14052622-14052915,14053602-14053732,14053829-14055440,
            14055539-14055651,14055902-14056933,14057023-14057145,
            14057250-14057688
          Length = 1656

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 15/63 (23%), Positives = 32/63 (50%)
 Frame = +2

Query: 197  VSVILYRYFGEIVQKVGDDLYAYGSKPIALILKTTGLPRSQVVDSLRTLLKFDLATFEPS 376
            V  ++ R   +++  +G+D+  YG   I+ I + T    +++++ L  L+  D      S
Sbjct: 1076 VEQMVLRDIRDLLHSMGNDITEYGLLEISDIGERTNDVMTEIIEELNVLVDQDHLDIYTS 1135

Query: 377  VND 385
            +ND
Sbjct: 1136 LND 1138


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,862,847
Number of Sequences: 37544
Number of extensions: 194879
Number of successful extensions: 302
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 302
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 859680288
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)