Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_B14
(446 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U93867-1|AAB63675.1| 533|Homo sapiens RNA polymerase III subuni... 46 8e-05
BC004424-1|AAH04424.1| 411|Homo sapiens POLR3C protein protein. 46 8e-05
BC002586-1|AAH02586.1| 534|Homo sapiens polymerase (RNA) III (D... 46 8e-05
AY091463-1|AAM12033.1| 534|Homo sapiens RNA polymerase III subu... 46 8e-05
AJ238221-1|CAB41919.1| 534|Homo sapiens RNA polymerase III subu... 46 8e-05
AK223413-1|BAD97133.1| 534|Homo sapiens polymerase (RNA) III (D... 44 2e-04
Y00816-1|CAA68755.1| 2039|Homo sapiens protein ( Human mRNA for ... 33 0.59
X05309-1|CAA28933.1| 1537|Homo sapiens protein ( Human mRNA for ... 33 0.59
L17418-2|AAB60694.1| 2039|Homo sapiens complement receptor 1 pro... 33 0.59
L17418-1|AAB60695.1| 2489|Homo sapiens complement receptor 1 pro... 33 0.59
AL691452-3|CAI16725.1| 2039|Homo sapiens complement component (3... 33 0.59
AL691452-2|CAI16723.1| 2039|Homo sapiens complement component (3... 33 0.59
AL691452-1|CAI16724.1| 2039|Homo sapiens complement component (3... 33 0.59
AL137789-3|CAI16043.1| 2039|Homo sapiens complement component (3... 33 0.59
AL137789-2|CAI16042.1| 2039|Homo sapiens complement component (3... 33 0.59
AL137789-1|CAI16044.1| 2039|Homo sapiens complement component (3... 33 0.59
D87437-1|BAA13381.2| 1122|Homo sapiens KIAA0250 protein. 29 9.5
BC052565-1|AAH52565.1| 839|Homo sapiens SMG7 protein protein. 29 9.5
BC036381-1|AAH36381.1| 1178|Homo sapiens SMG7 protein protein. 29 9.5
AY386363-1|AAR25620.1| 802|Homo sapiens breast cancer-associate... 29 9.5
AL449223-4|CAI16627.1| 1137|Homo sapiens Smg-7 homolog, nonsense... 29 9.5
AL137800-13|CAI19486.1| 1137|Homo sapiens Smg-7 homolog, nonsens... 29 9.5
AL137800-3|CAI19478.1| 1099|Homo sapiens Smg-7 homolog, nonsense... 29 9.5
AL137800-2|CAI19477.1| 757|Homo sapiens Smg-7 homolog, nonsense... 29 9.5
AK091477-1|BAC03672.1| 757|Homo sapiens protein ( Homo sapiens ... 29 9.5
AK056035-1|BAB71079.1| 799|Homo sapiens protein ( Homo sapiens ... 29 9.5
AB085674-2|BAC53622.1| 1071|Homo sapiens SMG-7 transcript varian... 29 9.5
AB085674-1|BAC53621.1| 1137|Homo sapiens SMG-7 protein. 29 9.5
>U93867-1|AAB63675.1| 533|Homo sapiens RNA polymerase III subunit
protein.
Length = 533
Score = 45.6 bits (103), Expect = 8e-05
Identities = 21/60 (35%), Positives = 38/60 (63%)
Frame = +2
Query: 191 RVVSVILYRYFGEIVQKVGDDLYAYGSKPIALILKTTGLPRSQVVDSLRTLLKFDLATFE 370
++ S++L +FGEIV+K+G L GS+P+ +I TG QV +L L++ +L +++
Sbjct: 7 KLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLVQHNLVSYQ 66
>BC004424-1|AAH04424.1| 411|Homo sapiens POLR3C protein protein.
Length = 411
Score = 45.6 bits (103), Expect = 8e-05
Identities = 21/60 (35%), Positives = 38/60 (63%)
Frame = +2
Query: 191 RVVSVILYRYFGEIVQKVGDDLYAYGSKPIALILKTTGLPRSQVVDSLRTLLKFDLATFE 370
++ S++L +FGEIV+K+G L GS+P+ +I TG QV +L L++ +L +++
Sbjct: 7 KLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLVQHNLVSYQ 66
>BC002586-1|AAH02586.1| 534|Homo sapiens polymerase (RNA) III (DNA
directed) polypeptide C (62kD) protein.
Length = 534
Score = 45.6 bits (103), Expect = 8e-05
Identities = 21/60 (35%), Positives = 38/60 (63%)
Frame = +2
Query: 191 RVVSVILYRYFGEIVQKVGDDLYAYGSKPIALILKTTGLPRSQVVDSLRTLLKFDLATFE 370
++ S++L +FGEIV+K+G L GS+P+ +I TG QV +L L++ +L +++
Sbjct: 7 KLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLVQHNLVSYQ 66
>AY091463-1|AAM12033.1| 534|Homo sapiens RNA polymerase III subunit
RPC62 protein.
Length = 534
Score = 45.6 bits (103), Expect = 8e-05
Identities = 21/60 (35%), Positives = 38/60 (63%)
Frame = +2
Query: 191 RVVSVILYRYFGEIVQKVGDDLYAYGSKPIALILKTTGLPRSQVVDSLRTLLKFDLATFE 370
++ S++L +FGEIV+K+G L GS+P+ +I TG QV +L L++ +L +++
Sbjct: 7 KLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLVQHNLVSYQ 66
>AJ238221-1|CAB41919.1| 534|Homo sapiens RNA polymerase III subunit
protein.
Length = 534
Score = 45.6 bits (103), Expect = 8e-05
Identities = 21/60 (35%), Positives = 38/60 (63%)
Frame = +2
Query: 191 RVVSVILYRYFGEIVQKVGDDLYAYGSKPIALILKTTGLPRSQVVDSLRTLLKFDLATFE 370
++ S++L +FGEIV+K+G L GS+P+ +I TG QV +L L++ +L +++
Sbjct: 7 KLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLVQHNLVSYQ 66
>AK223413-1|BAD97133.1| 534|Homo sapiens polymerase (RNA) III (DNA
directed) polypeptide C (62kD) variant protein.
Length = 534
Score = 44.4 bits (100), Expect = 2e-04
Identities = 21/60 (35%), Positives = 37/60 (61%)
Frame = +2
Query: 191 RVVSVILYRYFGEIVQKVGDDLYAYGSKPIALILKTTGLPRSQVVDSLRTLLKFDLATFE 370
++ S++L +FGEIV+K+G L GS+P+ +I TG QV +L L + +L +++
Sbjct: 7 KLCSLLLQEHFGEIVEKIGVRLIRTGSQPLRVIAHDTGTSLDQVKKALCVLAQHNLVSYQ 66
>Y00816-1|CAA68755.1| 2039|Homo sapiens protein ( Human mRNA for
complement receptor type 1 (CR1, C3b/C4b receptor,
CD35). ).
Length = 2039
Score = 32.7 bits (71), Expect = 0.59
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +1
Query: 76 SDLNFTYNFTYLCN*NDRCTMVPQHNCLIVS*NVTSTRKSGVCDTIS 216
+D F Y CN R P CL+ NVT +K+ +C+ IS
Sbjct: 1472 TDTQFGSTVNYSCNEGFRLIGSPSTTCLVSGNNVTWDKKAPICEIIS 1518
>X05309-1|CAA28933.1| 1537|Homo sapiens protein ( Human mRNA for
C3b/C4b receptor (CR1) F allotype. ).
Length = 1537
Score = 32.7 bits (71), Expect = 0.59
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +1
Query: 76 SDLNFTYNFTYLCN*NDRCTMVPQHNCLIVS*NVTSTRKSGVCDTIS 216
+D F Y CN R P CL+ NVT +K+ +C+ IS
Sbjct: 970 TDTQFGSTVNYSCNEGFRLIGSPSTTCLVSGNNVTWDKKAPICEIIS 1016
>L17418-2|AAB60694.1| 2039|Homo sapiens complement receptor 1 protein.
Length = 2039
Score = 32.7 bits (71), Expect = 0.59
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +1
Query: 76 SDLNFTYNFTYLCN*NDRCTMVPQHNCLIVS*NVTSTRKSGVCDTIS 216
+D F Y CN R P CL+ NVT +K+ +C+ IS
Sbjct: 1472 TDTQFGSTVNYSCNEGFRLIGSPSTTCLVSGNNVTWDKKAPICEIIS 1518
>L17418-1|AAB60695.1| 2489|Homo sapiens complement receptor 1 protein.
Length = 2489
Score = 32.7 bits (71), Expect = 0.59
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +1
Query: 76 SDLNFTYNFTYLCN*NDRCTMVPQHNCLIVS*NVTSTRKSGVCDTIS 216
+D F Y CN R P CL+ NVT +K+ +C+ IS
Sbjct: 1922 TDTQFGSTVNYSCNEGFRLIGSPSTTCLVSGNNVTWDKKAPICEIIS 1968
>AL691452-3|CAI16725.1| 2039|Homo sapiens complement component (3b/4b)
receptor 1 (Knops blood group) protein.
Length = 2039
Score = 32.7 bits (71), Expect = 0.59
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +1
Query: 76 SDLNFTYNFTYLCN*NDRCTMVPQHNCLIVS*NVTSTRKSGVCDTIS 216
+D F Y CN R P CL+ NVT +K+ +C+ IS
Sbjct: 1472 TDTQFGSTVNYSCNEGFRLIGSPSTTCLVSGNNVTWDKKAPICEIIS 1518
>AL691452-2|CAI16723.1| 2039|Homo sapiens complement component (3b/4b)
receptor 1 (Knops blood group) protein.
Length = 2039
Score = 32.7 bits (71), Expect = 0.59
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +1
Query: 76 SDLNFTYNFTYLCN*NDRCTMVPQHNCLIVS*NVTSTRKSGVCDTIS 216
+D F Y CN R P CL+ NVT +K+ +C+ IS
Sbjct: 1472 TDTQFGSTVNYSCNEGFRLIGSPSTTCLVSGNNVTWDKKAPICEIIS 1518
>AL691452-1|CAI16724.1| 2039|Homo sapiens complement component (3b/4b)
receptor 1 (Knops blood group) protein.
Length = 2039
Score = 32.7 bits (71), Expect = 0.59
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +1
Query: 76 SDLNFTYNFTYLCN*NDRCTMVPQHNCLIVS*NVTSTRKSGVCDTIS 216
+D F Y CN R P CL+ NVT +K+ +C+ IS
Sbjct: 1472 TDTQFGSTVNYSCNEGFRLIGSPSTTCLVSGNNVTWDKKAPICEIIS 1518
>AL137789-3|CAI16043.1| 2039|Homo sapiens complement component (3b/4b)
receptor 1 (Knops blood group) protein.
Length = 2039
Score = 32.7 bits (71), Expect = 0.59
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +1
Query: 76 SDLNFTYNFTYLCN*NDRCTMVPQHNCLIVS*NVTSTRKSGVCDTIS 216
+D F Y CN R P CL+ NVT +K+ +C+ IS
Sbjct: 1472 TDTQFGSTVNYSCNEGFRLIGSPSTTCLVSGNNVTWDKKAPICEIIS 1518
>AL137789-2|CAI16042.1| 2039|Homo sapiens complement component (3b/4b)
receptor 1 (Knops blood group) protein.
Length = 2039
Score = 32.7 bits (71), Expect = 0.59
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +1
Query: 76 SDLNFTYNFTYLCN*NDRCTMVPQHNCLIVS*NVTSTRKSGVCDTIS 216
+D F Y CN R P CL+ NVT +K+ +C+ IS
Sbjct: 1472 TDTQFGSTVNYSCNEGFRLIGSPSTTCLVSGNNVTWDKKAPICEIIS 1518
>AL137789-1|CAI16044.1| 2039|Homo sapiens complement component (3b/4b)
receptor 1 (Knops blood group) protein.
Length = 2039
Score = 32.7 bits (71), Expect = 0.59
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +1
Query: 76 SDLNFTYNFTYLCN*NDRCTMVPQHNCLIVS*NVTSTRKSGVCDTIS 216
+D F Y CN R P CL+ NVT +K+ +C+ IS
Sbjct: 1472 TDTQFGSTVNYSCNEGFRLIGSPSTTCLVSGNNVTWDKKAPICEIIS 1518
>D87437-1|BAA13381.2| 1122|Homo sapiens KIAA0250 protein.
Length = 1122
Score = 28.7 bits (61), Expect = 9.5
Identities = 16/28 (57%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = -3
Query: 375 EGSNVAKSNLSSVRRLSTTCDLG-KPVV 295
+GS KS LS+ R LS CD G KPVV
Sbjct: 549 DGSPGLKSVLSTSRNLSNNCDTGEKPVV 576
>BC052565-1|AAH52565.1| 839|Homo sapiens SMG7 protein protein.
Length = 839
Score = 28.7 bits (61), Expect = 9.5
Identities = 16/28 (57%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = -3
Query: 375 EGSNVAKSNLSSVRRLSTTCDLG-KPVV 295
+GS KS LS+ R LS CD G KPVV
Sbjct: 266 DGSPGLKSVLSTSRNLSNNCDTGEKPVV 293
>BC036381-1|AAH36381.1| 1178|Homo sapiens SMG7 protein protein.
Length = 1178
Score = 28.7 bits (61), Expect = 9.5
Identities = 16/28 (57%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = -3
Query: 375 EGSNVAKSNLSSVRRLSTTCDLG-KPVV 295
+GS KS LS+ R LS CD G KPVV
Sbjct: 518 DGSPGLKSVLSTSRNLSNNCDTGEKPVV 545
>AY386363-1|AAR25620.1| 802|Homo sapiens breast cancer-associated
antigen SGA-56M protein.
Length = 802
Score = 28.7 bits (61), Expect = 9.5
Identities = 16/28 (57%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = -3
Query: 375 EGSNVAKSNLSSVRRLSTTCDLG-KPVV 295
+GS KS LS+ R LS CD G KPVV
Sbjct: 183 DGSPGLKSVLSTSRNLSNNCDTGEKPVV 210
>AL449223-4|CAI16627.1| 1137|Homo sapiens Smg-7 homolog, nonsense
mediated mRNA decay factor (C. elegans) protein.
Length = 1137
Score = 28.7 bits (61), Expect = 9.5
Identities = 16/28 (57%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = -3
Query: 375 EGSNVAKSNLSSVRRLSTTCDLG-KPVV 295
+GS KS LS+ R LS CD G KPVV
Sbjct: 518 DGSPGLKSVLSTSRNLSNNCDTGEKPVV 545
>AL137800-13|CAI19486.1| 1137|Homo sapiens Smg-7 homolog, nonsense
mediated mRNA decay factor (C. elegans) protein.
Length = 1137
Score = 28.7 bits (61), Expect = 9.5
Identities = 16/28 (57%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = -3
Query: 375 EGSNVAKSNLSSVRRLSTTCDLG-KPVV 295
+GS KS LS+ R LS CD G KPVV
Sbjct: 518 DGSPGLKSVLSTSRNLSNNCDTGEKPVV 545
>AL137800-3|CAI19478.1| 1099|Homo sapiens Smg-7 homolog, nonsense
mediated mRNA decay factor (C. elegans) protein.
Length = 1099
Score = 28.7 bits (61), Expect = 9.5
Identities = 16/28 (57%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = -3
Query: 375 EGSNVAKSNLSSVRRLSTTCDLG-KPVV 295
+GS KS LS+ R LS CD G KPVV
Sbjct: 476 DGSPGLKSVLSTSRNLSNNCDTGEKPVV 503
>AL137800-2|CAI19477.1| 757|Homo sapiens Smg-7 homolog, nonsense
mediated mRNA decay factor (C. elegans) protein.
Length = 757
Score = 28.7 bits (61), Expect = 9.5
Identities = 16/28 (57%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = -3
Query: 375 EGSNVAKSNLSSVRRLSTTCDLG-KPVV 295
+GS KS LS+ R LS CD G KPVV
Sbjct: 476 DGSPGLKSVLSTSRNLSNNCDTGEKPVV 503
>AK091477-1|BAC03672.1| 757|Homo sapiens protein ( Homo sapiens
cDNA FLJ34158 fis, clone FCBBF3013589, weakly similar to
GLUTENIN, LOW MOLECULAR WEIGHT SUBUNIT PRECURSOR. ).
Length = 757
Score = 28.7 bits (61), Expect = 9.5
Identities = 16/28 (57%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = -3
Query: 375 EGSNVAKSNLSSVRRLSTTCDLG-KPVV 295
+GS KS LS+ R LS CD G KPVV
Sbjct: 476 DGSPGLKSVLSTSRNLSNNCDTGEKPVV 503
>AK056035-1|BAB71079.1| 799|Homo sapiens protein ( Homo sapiens
cDNA FLJ31473 fis, clone NT2NE2001530. ).
Length = 799
Score = 28.7 bits (61), Expect = 9.5
Identities = 16/28 (57%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = -3
Query: 375 EGSNVAKSNLSSVRRLSTTCDLG-KPVV 295
+GS KS LS+ R LS CD G KPVV
Sbjct: 518 DGSPGLKSVLSTSRNLSNNCDTGEKPVV 545
>AB085674-2|BAC53622.1| 1071|Homo sapiens SMG-7 transcript variant 2
protein.
Length = 1071
Score = 28.7 bits (61), Expect = 9.5
Identities = 16/28 (57%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = -3
Query: 375 EGSNVAKSNLSSVRRLSTTCDLG-KPVV 295
+GS KS LS+ R LS CD G KPVV
Sbjct: 518 DGSPGLKSVLSTSRNLSNNCDTGEKPVV 545
>AB085674-1|BAC53621.1| 1137|Homo sapiens SMG-7 protein.
Length = 1137
Score = 28.7 bits (61), Expect = 9.5
Identities = 16/28 (57%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = -3
Query: 375 EGSNVAKSNLSSVRRLSTTCDLG-KPVV 295
+GS KS LS+ R LS CD G KPVV
Sbjct: 518 DGSPGLKSVLSTSRNLSNNCDTGEKPVV 545
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,298,871
Number of Sequences: 237096
Number of extensions: 1169737
Number of successful extensions: 1557
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1557
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3644351872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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