Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_B13
         (365 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase Ceg1|Schizosacc...    27   0.91 
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    26   2.1  
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos...    26   2.1  
SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr 2|...    25   3.7  
SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6 |Schizosaccharo...    25   4.9  
SPBC409.17c |||DUF1769 family protein|Schizosaccharomyces pombe|...    25   4.9  
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac...    25   4.9  
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz...    25   4.9  
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|...    24   6.4  
SPBC83.14c |rfc5||DNA replication factor C complex subunit Rfc5 ...    24   8.5  
SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual      24   8.5  
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy...    24   8.5  
SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual     24   8.5  

>SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase
           Ceg1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 402

 Score = 27.1 bits (57), Expect = 0.91
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +2

Query: 44  ETVVYRKKPVTLSRELRSERKNDDEPELMKVS 139
           E    RKKP    R+L  E  NDD P + KV+
Sbjct: 365 EAYYNRKKPSVTKRKL-DETSNDDAPAIKKVA 395


>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1242

 Score = 25.8 bits (54), Expect = 2.1
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = -2

Query: 352 QRYRQASSLLPEQYLRFLYHCHVILSKPSRT 260
           QRY       P+QY  FL     I+SKPS T
Sbjct: 860 QRYSDEEGYYPKQYFSFLRR---IISKPSDT 887


>SPCC1322.12c |bub1||serine/threonine protein kinase
           Bub1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1044

 Score = 25.8 bits (54), Expect = 2.1
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -1

Query: 194 SIFERYCQRRCFD-LRDLRATPSSTQVHRRFFFHFSILLIM 75
           S FE Y  R+    L+ LR T S   VH+   FH +  L+M
Sbjct: 768 SCFEFYLTRQAMTRLKGLRETNSILPVHQLHMFHDTSHLLM 808


>SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 207

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +1

Query: 247 PKKRRFETASIKSRDSDKE-NEDIAQEEEK 333
           PKKR  +  + KSR  D+E  +  A+E+EK
Sbjct: 4   PKKRAEKAEAAKSRKQDEEKKKKDAEEDEK 33


>SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 777

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 16/62 (25%), Positives = 29/62 (46%)
 Frame = +2

Query: 107 NDDEPELMKVSHVDPSNQSIDADSIAQIY*I*DVSTSDNSGTKSKLLQKNGGSRRLR*NH 286
           N  + +  K++H +PSN   + +   +     + STS +   K K  +KN G   +   H
Sbjct: 653 NKQKRDSSKLNHKEPSNPIEERNEDIEPS---EASTSVSKKRKQKKKKKNSGKLTIEAEH 709

Query: 287 VT 292
           V+
Sbjct: 710 VS 711


>SPBC409.17c |||DUF1769 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 222

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +3

Query: 150 PQIKASTLTVSLKYTKSKTCLHPIIVEQKVNYSKKTEVRDG 272
           P    STL++S+ YTK    +      Q + Y  KT  RDG
Sbjct: 174 PFFNPSTLSISIPYTKMSFSIKNYYNGQPLRYFCKT--RDG 212


>SPAC23C4.02 |crn1||actin binding protein, coronin
           Crn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +2

Query: 29  NEKHDETVVYRKKPVTLSRELRSERKNDDEPELMKVSHVDPSNQSIDADS 178
           NE+  ET     +PV+  +E   E+K   EPE   V    PS   ++  S
Sbjct: 421 NEEKVETPKPEAQPVSKPKESAEEQKPSKEPE---VKPTTPSASKVEEPS 467


>SPCC1795.08c |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 985

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 14/59 (23%), Positives = 27/59 (45%)
 Frame = +2

Query: 5   EADSNEIKNEKHDETVVYRKKPVTLSRELRSERKNDDEPELMKVSHVDPSNQSIDADSI 181
           + +S E+K ++  ET      PVT++  L  E K     E+ +V   +      D +++
Sbjct: 244 QVESKEVKKKEVSETTEPTAPPVTVAEVLEIEDKVPKVDEVEEVHSPEAKVTENDVENV 302


>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +1

Query: 235 K*TTPKKRRFETASIKSRDSDKENEDIAQEEEK 333
           K TT    +F   S+   D D E+ED   E EK
Sbjct: 248 KMTTFTMNKFADLSVLEEDDDDEDEDEELEGEK 280


>SPBC83.14c |rfc5||DNA replication factor C complex subunit Rfc5
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 358

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +3

Query: 177 VSLKYTKSKTCLHPIIVEQKVNYSKKTEV 263
           +S   +K  T LHP +++   NY  +T +
Sbjct: 299 LSFFLSKVDTKLHPYLIQAAANYEHRTRM 327


>SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 478

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = +1

Query: 250 KKRRFETASIKSRDSDKENEDIAQEEEKRLVD 345
           KKRRF+   ++ ++S+  N+ I +  +  L +
Sbjct: 18  KKRRFDANLVQLQESEHRNDQINETVDAELTN 49


>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1201

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 104 KNDDEPELMKVSHVDPSN 157
           K++D    +KVSH DPS+
Sbjct: 32  KSEDHSNHIKVSHFDPSS 49


>SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 554

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -1

Query: 173 QRRCFDLRDLRATPSSTQVHRRFFFHFSIL 84
           +R      D+   PS+ Q H RF   F IL
Sbjct: 97  ERSSLPFEDMENAPSTVQTHLRFSPTFRIL 126


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,231,659
Number of Sequences: 5004
Number of extensions: 21911
Number of successful extensions: 89
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 114084208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)