Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_B13
(365 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0339 - 7623897-7625837 34 0.030
10_01_0269 - 2865731-2865752,2866627-2868605 31 0.28
04_04_1581 - 34581455-34581466,34581525-34581616,34582584-345826... 28 2.0
05_07_0056 + 27382708-27383871,27384450-27384818 28 2.6
03_05_0816 + 27928812-27930059,27931007-27931111,27931197-279312... 27 6.0
01_01_0553 - 4067921-4068180,4068437-4068455,4069101-4070225 27 6.0
06_03_0097 - 16607936-16608712,16610114-16610320,16611220-166113... 26 7.9
03_06_0345 - 33281126-33281783,33281872-33282063,33282175-332822... 26 7.9
01_06_0267 - 28022317-28022580,28023232-28023515,28024067-280244... 26 7.9
>03_02_0339 - 7623897-7625837
Length = 646
Score = 34.3 bits (75), Expect = 0.030
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Frame = -2
Query: 343 RQASSLLPEQYLRFLYHCHVILSKPSRTSVFLE*FTFCSTII---GCRHVLDLVYLSDTV 173
R LL E+ L V L+K + T L + C I+ G RH++ LVYL D V
Sbjct: 523 RPLVELLDERELPVTKEAVVALTKFACTENHLH-VSHCKAIVDGGGARHLVQLVYLGDQV 581
Query: 172 SVDALI*GIYV 140
++ALI Y+
Sbjct: 582 QIEALILLCYI 592
>10_01_0269 - 2865731-2865752,2866627-2868605
Length = 666
Score = 31.1 bits (67), Expect = 0.28
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 3/29 (10%)
Frame = -2
Query: 232 CSTII---GCRHVLDLVYLSDTVSVDALI 155
C I+ G RH++ LVYL D V ++ALI
Sbjct: 573 CKAIVDSGGARHLVQLVYLGDEVQIEALI 601
>04_04_1581 -
34581455-34581466,34581525-34581616,34582584-34582686,
34583761-34583837,34583913-34583959,34584494-34584594,
34584751-34584840,34585152-34585271,34586171-34586517,
34587013-34587285,34587835-34588165
Length = 530
Score = 28.3 bits (60), Expect = 2.0
Identities = 14/46 (30%), Positives = 19/46 (41%)
Frame = +2
Query: 26 KNEKHDETVVYRKKPVTLSRELRSERKNDDEPELMKVSHVDPSNQS 163
K E+ + V P+ R KNDD P+ VS NQ+
Sbjct: 306 KRERKRKVVAGMDPPIVFRRSDMESEKNDDNPDQTPVSEPPSMNQN 351
>05_07_0056 + 27382708-27383871,27384450-27384818
Length = 510
Score = 27.9 bits (59), Expect = 2.6
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -2
Query: 325 LPEQYLRFLYHCHVILSKPSRTSVFLE*FTFCST 224
L E++ FL+ V L KP V+L+ T+C T
Sbjct: 286 LKEEHKIFLWRVLVPLHKPKSVGVYLQQLTYCVT 319
>03_05_0816 +
27928812-27930059,27931007-27931111,27931197-27931262,
27931337-27931501,27931671-27931745,27931829-27931983,
27932234-27932369,27932454-27932523,27932602-27932729,
27932838-27932894,27933326-27933511,27934031-27934123,
27934488-27934573,27934668-27934734,27934873-27934939,
27935016-27935152,27935618-27935709,27935849-27935915,
27936058-27936078
Length = 1006
Score = 26.6 bits (56), Expect = 6.0
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 253 KRRFETASIKSRDSDKENEDIAQEEEKR 336
+RR T K+ D D E ED+ +EE ++
Sbjct: 763 RRRERTDRAKAEDFDSEEEDLLREENEQ 790
>01_01_0553 - 4067921-4068180,4068437-4068455,4069101-4070225
Length = 467
Score = 26.6 bits (56), Expect = 6.0
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -2
Query: 325 LPEQYLRFLYHCHVILSKPSRTSVFLE*FTFCST 224
L E++ FL+ + L KP V+L T+C T
Sbjct: 273 LKEEHKLFLWKALIPLHKPKTVGVYLPQLTYCIT 306
>06_03_0097 -
16607936-16608712,16610114-16610320,16611220-16611336,
16611409-16611690,16611811-16612294,16612791-16612929,
16613138-16613243,16613396-16613562,16613632-16613707,
16614173-16614321,16614813-16614874,16615232-16615335,
16616856-16616950,16617046-16617136,16617785-16617922
Length = 997
Score = 26.2 bits (55), Expect = 7.9
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +2
Query: 62 KKPVTLSRELRSERKNDDEPELMKVSHVDPSNQSIDADSI 181
++PV L + + S+ +DD E + VDP S DA+ +
Sbjct: 732 QRPVDLYKAIFSDDSDDDMAEPLANQPVDPVKTSEDANMV 771
>03_06_0345 -
33281126-33281783,33281872-33282063,33282175-33282217,
33282751-33282874,33282966-33283058,33284484-33284685,
33284751-33284857,33285462-33285543,33285629-33285666,
33285751-33285837,33286324-33286434,33286554-33286904
Length = 695
Score = 26.2 bits (55), Expect = 7.9
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +2
Query: 56 YRKKPVTLSRELRSERKNDDEPELMKVSHVDPSNQSID 169
+ KKP TL R R + + + +S VDP+ S D
Sbjct: 467 WEKKPETLDRRQRKRSRRYTQDFVEAISDVDPNFDSDD 504
>01_06_0267 -
28022317-28022580,28023232-28023515,28024067-28024463,
28024563-28024736
Length = 372
Score = 26.2 bits (55), Expect = 7.9
Identities = 13/53 (24%), Positives = 27/53 (50%)
Frame = +2
Query: 8 ADSNEIKNEKHDETVVYRKKPVTLSRELRSERKNDDEPELMKVSHVDPSNQSI 166
AD ++++ HD TVV ++ + L+ +LR + + L+ + P N +
Sbjct: 123 ADEGFLQSKDHDHTVVVQQAKIYLAFQLRFQSPLRRQQVLLAFGNAIPVNDRL 175
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,341,124
Number of Sequences: 37544
Number of extensions: 119981
Number of successful extensions: 408
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 405
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 564709324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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