Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_B13
(365 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D87119-1|BAA13250.1| 343|Homo sapiens GS3955 protein. 30 2.6
BC002637-1|AAH02637.1| 343|Homo sapiens tribbles homolog 2 (Dro... 30 2.6
AY245544-1|AAO89231.1| 343|Homo sapiens TRB2 protein protein. 30 2.6
AC009486-1|AAY15015.1| 343|Homo sapiens unknown protein. 30 2.6
Y09765-1|CAA70904.1| 506|Homo sapiens GABA receptor epsilon sub... 29 6.0
Y09763-1|CAA70903.1| 506|Homo sapiens GABRE protein. 29 6.0
Y07637-1|CAA68914.1| 505|Homo sapiens putative GABA-gated chlor... 29 6.0
U92283-1|AAB94645.1| 506|Homo sapiens GABA-A receptor epsilon s... 29 6.0
U66661-1|AAB49284.1| 506|Homo sapiens GABA-A receptor epsilon s... 29 6.0
BC059376-1|AAH59376.1| 365|Homo sapiens GABRE protein protein. 29 6.0
BC047108-1|AAH47108.1| 365|Homo sapiens GABRE protein protein. 29 6.0
BC026337-1|AAH26337.1| 365|Homo sapiens GABRE protein protein. 29 6.0
>D87119-1|BAA13250.1| 343|Homo sapiens GS3955 protein.
Length = 343
Score = 29.9 bits (64), Expect = 2.6
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 53 VYRKKPVTLSRELRSERKNDDEPELMKVSHVDPS 154
++R P+T++R RS K D EL + +PS
Sbjct: 3 IHRSTPITIARYGRSRNKTQDFEELSSIRSAEPS 36
>BC002637-1|AAH02637.1| 343|Homo sapiens tribbles homolog 2
(Drosophila) protein.
Length = 343
Score = 29.9 bits (64), Expect = 2.6
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 53 VYRKKPVTLSRELRSERKNDDEPELMKVSHVDPS 154
++R P+T++R RS K D EL + +PS
Sbjct: 3 IHRSTPITIARYGRSRNKTQDFEELSSIRSAEPS 36
>AY245544-1|AAO89231.1| 343|Homo sapiens TRB2 protein protein.
Length = 343
Score = 29.9 bits (64), Expect = 2.6
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 53 VYRKKPVTLSRELRSERKNDDEPELMKVSHVDPS 154
++R P+T++R RS K D EL + +PS
Sbjct: 3 IHRSTPITIARYGRSRNKTQDFEELSSIRSAEPS 36
>AC009486-1|AAY15015.1| 343|Homo sapiens unknown protein.
Length = 343
Score = 29.9 bits (64), Expect = 2.6
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 53 VYRKKPVTLSRELRSERKNDDEPELMKVSHVDPS 154
++R P+T++R RS K D EL + +PS
Sbjct: 3 IHRSTPITIARYGRSRNKTQDFEELSSIRSAEPS 36
>Y09765-1|CAA70904.1| 506|Homo sapiens GABA receptor epsilon
subunit protein.
Length = 506
Score = 28.7 bits (61), Expect = 6.0
Identities = 15/40 (37%), Positives = 17/40 (42%)
Frame = +2
Query: 5 EADSNEIKNEKHDETVVYRKKPVTLSRELRSERKNDDEPE 124
E E KNE VVY +P L +L SE E E
Sbjct: 21 EGPQTESKNEASSRDVVYGPQPQPLENQLLSEETKSTETE 60
>Y09763-1|CAA70903.1| 506|Homo sapiens GABRE protein.
Length = 506
Score = 28.7 bits (61), Expect = 6.0
Identities = 15/40 (37%), Positives = 17/40 (42%)
Frame = +2
Query: 5 EADSNEIKNEKHDETVVYRKKPVTLSRELRSERKNDDEPE 124
E E KNE VVY +P L +L SE E E
Sbjct: 21 EGPQTESKNEASSRDVVYGPQPQPLENQLLSEETKSTETE 60
>Y07637-1|CAA68914.1| 505|Homo sapiens putative GABA-gated chloride
channel protein.
Length = 505
Score = 28.7 bits (61), Expect = 6.0
Identities = 15/40 (37%), Positives = 17/40 (42%)
Frame = +2
Query: 5 EADSNEIKNEKHDETVVYRKKPVTLSRELRSERKNDDEPE 124
E E KNE VVY +P L +L SE E E
Sbjct: 21 EGPQTESKNEASSRDVVYGPQPQPLENQLLSEETKSTETE 60
>U92283-1|AAB94645.1| 506|Homo sapiens GABA-A receptor epsilon
subunit protein.
Length = 506
Score = 28.7 bits (61), Expect = 6.0
Identities = 15/40 (37%), Positives = 17/40 (42%)
Frame = +2
Query: 5 EADSNEIKNEKHDETVVYRKKPVTLSRELRSERKNDDEPE 124
E E KNE VVY +P L +L SE E E
Sbjct: 21 EGPQTESKNEASSRDVVYGPQPQPLENQLLSEETKSTETE 60
>U66661-1|AAB49284.1| 506|Homo sapiens GABA-A receptor epsilon
subunit protein.
Length = 506
Score = 28.7 bits (61), Expect = 6.0
Identities = 15/40 (37%), Positives = 17/40 (42%)
Frame = +2
Query: 5 EADSNEIKNEKHDETVVYRKKPVTLSRELRSERKNDDEPE 124
E E KNE VVY +P L +L SE E E
Sbjct: 21 EGPQTESKNEASSRDVVYGPQPQPLENQLLSEETKSTETE 60
>BC059376-1|AAH59376.1| 365|Homo sapiens GABRE protein protein.
Length = 365
Score = 28.7 bits (61), Expect = 6.0
Identities = 15/40 (37%), Positives = 17/40 (42%)
Frame = +2
Query: 5 EADSNEIKNEKHDETVVYRKKPVTLSRELRSERKNDDEPE 124
E E KNE VVY +P L +L SE E E
Sbjct: 21 EGPQTESKNEASSRDVVYGPQPQPLENQLLSEETKSTETE 60
>BC047108-1|AAH47108.1| 365|Homo sapiens GABRE protein protein.
Length = 365
Score = 28.7 bits (61), Expect = 6.0
Identities = 15/40 (37%), Positives = 17/40 (42%)
Frame = +2
Query: 5 EADSNEIKNEKHDETVVYRKKPVTLSRELRSERKNDDEPE 124
E E KNE VVY +P L +L SE E E
Sbjct: 21 EGPQTESKNEASSRDVVYGPQPQPLENQLLSEETKSTETE 60
>BC026337-1|AAH26337.1| 365|Homo sapiens GABRE protein protein.
Length = 365
Score = 28.7 bits (61), Expect = 6.0
Identities = 15/40 (37%), Positives = 17/40 (42%)
Frame = +2
Query: 5 EADSNEIKNEKHDETVVYRKKPVTLSRELRSERKNDDEPE 124
E E KNE VVY +P L +L SE E E
Sbjct: 21 EGPQTESKNEASSRDVVYGPQPQPLENQLLSEETKSTETE 60
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,587,216
Number of Sequences: 237096
Number of extensions: 676059
Number of successful extensions: 2291
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2291
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2306171440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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