Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_B13
         (365 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      24   0.49 
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   1.5  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   1.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   3.4  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   6.0  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   6.0  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    20   8.0  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    20   8.0  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 24.2 bits (50), Expect = 0.49
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 195 KSKTCLHPIIVEQKVNYS 248
           KS  C HP+IV Q V +S
Sbjct: 62  KSTPCKHPVIVLQDVAFS 79


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 22.6 bits (46), Expect = 1.5
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +2

Query: 89  LRSERKNDDEPELMKV 136
           L  E++NDD+P L+K+
Sbjct: 475 LLEEQRNDDKPFLIKI 490


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 22.6 bits (46), Expect = 1.5
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +2

Query: 89  LRSERKNDDEPELMKV 136
           L  E++NDD+P L+K+
Sbjct: 475 LLEEQRNDDKPFLIKI 490


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 3.4
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +1

Query: 250 KKRRFETASIKSRDSDKENED 312
           K+R+ +      RD D+ENE+
Sbjct: 268 KRRQNDGEGADDRDDDEENEE 288


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 20.6 bits (41), Expect = 6.0
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -1

Query: 143 RATPSSTQVHRRFFFHFSILLI 78
           RAT        RFFF FS L++
Sbjct: 353 RATAIYIDKVSRFFFPFSFLIL 374


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 20.6 bits (41), Expect = 6.0
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = -2

Query: 292 CHVILSKPSRTSVFLE 245
           CH++++ P R   F+E
Sbjct: 324 CHILVATPGRLLDFVE 339


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 20.2 bits (40), Expect = 8.0
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +1

Query: 295 DKENEDIAQEEEKRLVD 345
           D  N D++  EEKR ++
Sbjct: 430 DYRNNDLSINEEKRTIE 446


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 20.2 bits (40), Expect = 8.0
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = -2

Query: 235 FCSTIIGCR 209
           FC T IGC+
Sbjct: 163 FCETTIGCK 171


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,202
Number of Sequences: 438
Number of extensions: 1333
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8680350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)