Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_B12
         (342 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0448 - 34005581-34005655,34005735-34005830,34006669-340076...    29   0.72 
04_04_0039 + 22316171-22316273,22317124-22317824,22317924-223180...    26   6.7  
09_02_0182 + 5430380-5430694,5460162-5460950                           26   8.9  
05_03_0288 - 11653136-11654074,11655252-11655965                       26   8.9  

>03_06_0448 - 34005581-34005655,34005735-34005830,34006669-34007616,
            34007684-34007851,34007908-34008099,34008164-34008346,
            34008414-34008590,34008667-34012074
          Length = 1748

 Score = 29.5 bits (63), Expect = 0.72
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +2

Query: 5    STRWRRSKYGSPGLQESAR 61
            +T W+ SK+G PG++ES R
Sbjct: 1543 NTSWQPSKFGKPGMEESRR 1561


>04_04_0039 +
           22316171-22316273,22317124-22317824,22317924-22318010,
           22318361-22318420,22318971-22319912,22320678-22320723,
           22320889-22321010
          Length = 686

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 265 LFHDIRLCHK*SPCRPWWSCYGNYDF 342
           L H++RL  K   CR  W C+ +  F
Sbjct: 632 LRHNVRLQQKLEECRAMWGCFMSRKF 657


>09_02_0182 + 5430380-5430694,5460162-5460950
          Length = 367

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = -1

Query: 144 YQEVRNVKIHQEFQLLKFKREDEIF*VILADSCSPG-DPYLER-RHR 10
           YQ+ R++K+HQ    + F   D      L D   P   P L R RHR
Sbjct: 27  YQDPRHLKLHQVIATVDFSTRDTSTTFTLGDLTRPEYAPQLARNRHR 73


>05_03_0288 - 11653136-11654074,11655252-11655965
          Length = 550

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = +1

Query: 232 WYLLDKQKYTE--LFHDIRLCHK*SPC 306
           W  + ++KY +  +FHD RL  K +PC
Sbjct: 264 WQPVPREKYPKPLIFHDGRLAFKLTPC 290


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,034,709
Number of Sequences: 37544
Number of extensions: 119519
Number of successful extensions: 213
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 482105440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)