Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_B12
         (342 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50029-7|CAA90343.3|  447|Caenorhabditis elegans Hypothetical pr...    26   6.1  
U64842-2|AAB37084.1|  462|Caenorhabditis elegans Hypothetical pr...    26   6.1  
U12787-1|AAA92672.1|  458|Caenorhabditis elegans HMG CoA synthas...    26   6.1  
AF387606-1|AAK70489.1|  447|Caenorhabditis elegans putative chem...    26   6.1  
Z82069-2|CAB04904.1|  315|Caenorhabditis elegans Hypothetical pr...    26   8.1  
AC024810-8|AAU20830.1| 1446|Caenorhabditis elegans Hypothetical ...    26   8.1  

>Z50029-7|CAA90343.3|  447|Caenorhabditis elegans Hypothetical
           protein ZC504.5 protein.
          Length = 447

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 9/24 (37%), Positives = 18/24 (75%)
 Frame = -1

Query: 180 EMLKRIREFRIYYQEVRNVKIHQE 109
           + L++I + +I+YQE+ N K++ E
Sbjct: 265 QSLQQIHDVQIHYQEISNAKLYIE 288


>U64842-2|AAB37084.1|  462|Caenorhabditis elegans Hypothetical
           protein F25B4.6 protein.
          Length = 462

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = -2

Query: 179 KC*SVSGSLGFTIKKLGMLKYIRSFNC*SLKGRMRFFKLFSPIPA 45
           +C   +G++ F I     +   R F+   +K    FFK  +PIP+
Sbjct: 165 RCTGGAGAIAFLICPDASIPIDRQFSACHMKNTWDFFKPITPIPS 209


>U12787-1|AAA92672.1|  458|Caenorhabditis elegans HMG CoA synthase
           protein.
          Length = 458

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = -2

Query: 179 KC*SVSGSLGFTIKKLGMLKYIRSFNC*SLKGRMRFFKLFSPIPA 45
           +C   +G++ F I     +   R F+   +K    FFK  +PIP+
Sbjct: 161 RCTGGAGAIAFLICPDASIPIDRQFSACHMKNTWDFFKPITPIPS 205


>AF387606-1|AAK70489.1|  447|Caenorhabditis elegans putative
           chemoreceptor GUR-3 protein.
          Length = 447

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 9/24 (37%), Positives = 18/24 (75%)
 Frame = -1

Query: 180 EMLKRIREFRIYYQEVRNVKIHQE 109
           + L++I + +I+YQE+ N K++ E
Sbjct: 265 QSLQQIHDVQIHYQEISNAKLYIE 288


>Z82069-2|CAB04904.1|  315|Caenorhabditis elegans Hypothetical
           protein W04A8.3 protein.
          Length = 315

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = -1

Query: 180 EMLKRIREFRIYYQEVRNVK 121
           ++LKRI +F +YY ++R +K
Sbjct: 153 KLLKRILKFDVYYLDIRVIK 172


>AC024810-8|AAU20830.1| 1446|Caenorhabditis elegans Hypothetical
           protein Y54E10A.11 protein.
          Length = 1446

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -3

Query: 70  LSYSRRFLQPGGSIFRA 20
           L++ +RF+Q GG IFRA
Sbjct: 929 LTFVKRFIQCGGEIFRA 945


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,701,666
Number of Sequences: 27780
Number of extensions: 102185
Number of successful extensions: 180
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 440341558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)