Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_B10
(554 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 323 6e-89
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 323 6e-89
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 193 1e-66
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 152 1e-37
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 152 1e-37
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 138 2e-33
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 133 9e-32
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 74 8e-14
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 74 8e-14
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 74 8e-14
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 71 4e-13
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 71 4e-13
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 46 2e-05
Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical p... 40 0.001
AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical ... 38 0.005
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 35 0.045
AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical... 33 0.18
Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical pr... 31 0.42
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 30 1.3
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 30 1.3
DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr... 30 1.3
AC024859-2|AAK29971.2| 502|Caenorhabditis elegans Set (trithora... 29 1.7
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 29 3.0
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 28 3.9
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 28 3.9
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 27 6.9
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 27 6.9
Z75554-1|CAA99953.3| 681|Caenorhabditis elegans Hypothetical pr... 27 6.9
U41993-3|AAA83445.1| 384|Caenorhabditis elegans Nuclear hormone... 27 6.9
U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy ch... 27 9.1
U58756-9|AAC48086.1| 667|Caenorhabditis elegans Hypothetical pr... 27 9.1
U56961-6|AAK39299.1| 497|Caenorhabditis elegans Hypothetical pr... 27 9.1
U41272-4|AAA82448.2| 349|Caenorhabditis elegans Hypothetical pr... 27 9.1
L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy ch... 27 9.1
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 323 bits (793), Expect = 6e-89
Identities = 150/181 (82%), Positives = 162/181 (89%)
Frame = +2
Query: 11 ETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLA 190
ET KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GTGEFEAGISKNGQTREHALLA
Sbjct: 81 ETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNGQTREHALLA 140
Query: 191 FTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDN 370
TLGVKQLIV NKMDSTEPP+SE+RF EI EVS +IKKIGYNP AV FVPISG++GDN
Sbjct: 141 QTLGVKQLIVACNKMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVPISGFNGDN 200
Query: 371 MLEPSTKMPWFKGWLVERKEGKAEGKCLIEALDAILPPARPTDKALRLPLQDVYKIGGIG 550
MLE S+ MPWFKGW VERKEG A GK L+EALD+I+PP RPTD+ LRLPLQDVYKIGGIG
Sbjct: 201 MLEVSSNMPWFKGWAVERKEGNASGKTLLEALDSIIPPQRPTDRPLRLPLQDVYKIGGIG 260
Query: 551 T 553
T
Sbjct: 261 T 261
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 323 bits (793), Expect = 6e-89
Identities = 150/181 (82%), Positives = 162/181 (89%)
Frame = +2
Query: 11 ETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLA 190
ET KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GTGEFEAGISKNGQTREHALLA
Sbjct: 81 ETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNGQTREHALLA 140
Query: 191 FTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDN 370
TLGVKQLIV NKMDSTEPP+SE+RF EI EVS +IKKIGYNP AV FVPISG++GDN
Sbjct: 141 QTLGVKQLIVACNKMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVPISGFNGDN 200
Query: 371 MLEPSTKMPWFKGWLVERKEGKAEGKCLIEALDAILPPARPTDKALRLPLQDVYKIGGIG 550
MLE S+ MPWFKGW VERKEG A GK L+EALD+I+PP RPTD+ LRLPLQDVYKIGGIG
Sbjct: 201 MLEVSSNMPWFKGWAVERKEGNASGKTLLEALDSIIPPQRPTDRPLRLPLQDVYKIGGIG 260
Query: 551 T 553
T
Sbjct: 261 T 261
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 193 bits (470), Expect(2) = 1e-66
Identities = 87/114 (76%), Positives = 98/114 (85%)
Frame = +2
Query: 212 LIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTK 391
L+V NKMDSTEPP+SE+RF EI EVS +IKKIGYNP AV FVPISG++GDNMLE S+
Sbjct: 114 LVVACNKMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVPISGFNGDNMLEVSSN 173
Query: 392 MPWFKGWLVERKEGKAEGKCLIEALDAILPPARPTDKALRLPLQDVYKIGGIGT 553
MPWFKGW VERKEG A GK L+EALD+I+PP RPTD+ LRLPLQDVYKIGGIGT
Sbjct: 174 MPWFKGWAVERKEGNASGKTLLEALDSIIPPQRPTDRPLRLPLQDVYKIGGIGT 227
Score = 78.2 bits (184), Expect(2) = 1e-66
Identities = 34/37 (91%), Positives = 36/37 (97%)
Frame = +2
Query: 11 ETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 121
ET KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA
Sbjct: 81 ETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVA 117
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 152 bits (369), Expect = 1e-37
Identities = 78/177 (44%), Positives = 117/177 (66%), Gaps = 1/177 (0%)
Frame = +2
Query: 11 ETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLA 190
ET + ++DAPGH+DFI NMITGTSQAD A+L+V A TGEFE G GQT+EHALL
Sbjct: 244 ETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEFETGFENGGQTKEHALLL 303
Query: 191 FTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYI-KKIGYNPAAVAFVPISGWHGD 367
+LGV QLIV VNK+D+ + +S+ RF+EIK +S ++ ++ G++ FVP+SG+ G+
Sbjct: 304 RSLGVTQLIVAVNKLDTVD--WSQDRFDEIKNNLSVFLTRQAGFSKP--KFVPVSGFTGE 359
Query: 368 NMLEPSTKMPWFKGWLVERKEGKAEGKCLIEALDAILPPARPTDKALRLPLQDVYKI 538
N+++ ++ W+ +G CL+E +D+ + P P+D LR+ + DV K+
Sbjct: 360 NLIK-RMELDWY------------DGPCLLELIDSFVAPQPPSDGPLRIGISDVLKV 403
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 152 bits (369), Expect = 1e-37
Identities = 78/177 (44%), Positives = 117/177 (66%), Gaps = 1/177 (0%)
Frame = +2
Query: 11 ETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLA 190
ET + ++DAPGH+DFI NMITGTSQAD A+L+V A TGEFE G GQT+EHALL
Sbjct: 262 ETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEFETGFENGGQTKEHALLL 321
Query: 191 FTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYI-KKIGYNPAAVAFVPISGWHGD 367
+LGV QLIV VNK+D+ + +S+ RF+EIK +S ++ ++ G++ FVP+SG+ G+
Sbjct: 322 RSLGVTQLIVAVNKLDTVD--WSQDRFDEIKNNLSVFLTRQAGFSKP--KFVPVSGFTGE 377
Query: 368 NMLEPSTKMPWFKGWLVERKEGKAEGKCLIEALDAILPPARPTDKALRLPLQDVYKI 538
N+++ ++ W+ +G CL+E +D+ + P P+D LR+ + DV K+
Sbjct: 378 NLIK-RMELDWY------------DGPCLLELIDSFVAPQPPSDGPLRIGISDVLKV 421
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 138 bits (334), Expect = 2e-33
Identities = 69/92 (75%), Positives = 75/92 (81%)
Frame = +2
Query: 11 ETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLA 190
ET KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GTGEFEAGISKNGQTREHALLA
Sbjct: 81 ETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNGQTREHALLA 140
Query: 191 FTLGVKQLIVGVNKMDSTEPPYSESRFEEIKK 286
TLGVKQL V+ T P S R + I++
Sbjct: 141 QTLGVKQL---VSLRSPTRSPDSSRRSDTIQR 169
Score = 53.6 bits (123), Expect = 9e-08
Identities = 40/93 (43%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Frame = +3
Query: 276 KSRRKSLPTSRKLVTI-RLPSLSYPFLAGTEITCWSRPPKCHGSRDGWLSVKKERLKVNA 452
+S +S +SR+ TI RL LS TE TC P CHGSRDG L+ +KE L
Sbjct: 152 RSPTRSPDSSRRSDTIQRLFHLSQS-PDSTETTCLRSPRTCHGSRDGLLNARKETLPERP 210
Query: 453 LLRPSTPSFRLLAPLTRLSVFPCKTYTKSAVLE 551
R TPS A LT SVF + T+S LE
Sbjct: 211 SSRLLTPSSHHNAQLTDHSVFHSRMCTRSEELE 243
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 133 bits (321), Expect = 9e-32
Identities = 67/158 (42%), Positives = 97/158 (61%), Gaps = 1/158 (0%)
Frame = +2
Query: 11 ETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLA 190
ET K + TI+DAPGH+ F+ NMI G +QAD AVL+++A GEFE G + GQTREH++L
Sbjct: 183 ETEKRHFTILDAPGHKSFVPNMIVGANQADLAVLVISARRGEFETGFDRGGQTREHSMLV 242
Query: 191 FTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAA-VAFVPISGWHGD 367
T GVK L++ VNKMD + E RF+EI+ +++ +++K+G+NP + +VP SG G
Sbjct: 243 KTAGVKHLVILVNKMDDPTVKWEEERFKEIEGKLTPFLRKLGFNPKTDITYVPCSGLTGA 302
Query: 368 NMLEPSTKMPWFKGWLVERKEGKAEGKCLIEALDAILP 481
+ + T W G C IE +D +LP
Sbjct: 303 FIKDRPTGSE--GNWY--------SGPCFIEFIDVLLP 330
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 73.7 bits (173), Expect = 8e-14
Identities = 45/107 (42%), Positives = 64/107 (59%), Gaps = 2/107 (1%)
Frame = +2
Query: 5 EVETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHAL 184
E ET K + ID PGH D+IKNMITG +Q + A+L+VAA G QTREH L
Sbjct: 106 EYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP-------QTREHLL 158
Query: 185 LAFTLGV--KQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGY 319
LA +GV ++V +NK+D E P +E+R E ++ ++ + + GY
Sbjct: 159 LARQVGVPLDNIVVFMNKVD--EVPDAETR-ELVEMDIREQLNEFGY 202
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 73.7 bits (173), Expect = 8e-14
Identities = 45/107 (42%), Positives = 64/107 (59%), Gaps = 2/107 (1%)
Frame = +2
Query: 5 EVETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHAL 184
E ET K + ID PGH D+IKNMITG +Q + A+L+VAA G QTREH L
Sbjct: 107 EYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP-------QTREHLL 159
Query: 185 LAFTLGV--KQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGY 319
LA +GV ++V +NK+D E P +E+R E ++ ++ + + GY
Sbjct: 160 LARQVGVPLDNIVVFMNKVD--EVPDAETR-ELVEMDIREQLNEFGY 203
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 73.7 bits (173), Expect = 8e-14
Identities = 45/107 (42%), Positives = 64/107 (59%), Gaps = 2/107 (1%)
Frame = +2
Query: 5 EVETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHAL 184
E ET K + ID PGH D+IKNMITG +Q + A+L+VAA G QTREH L
Sbjct: 107 EYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP-------QTREHLL 159
Query: 185 LAFTLGV--KQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGY 319
LA +GV ++V +NK+D E P +E+R E ++ ++ + + GY
Sbjct: 160 LARQVGVPLDNIVVFMNKVD--EVPDAETR-ELVEMDIREQLNEFGY 203
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 71.3 bits (167), Expect = 4e-13
Identities = 41/101 (40%), Positives = 55/101 (54%)
Frame = +2
Query: 41 DAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIV 220
D PGH DFIKNMI GTSQ D AVL++AA G E QT+EH +LA +GVK + +
Sbjct: 114 DCPGHSDFIKNMICGTSQMDVAVLVIAATDGVME-------QTKEHLILAKQVGVKNMAI 166
Query: 221 GVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFV 343
+NK D E E + ++ E + G+N A +
Sbjct: 167 FINKADLVE----EDDLDLVEMEARELLSLHGFNGDATPVI 203
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 71.3 bits (167), Expect = 4e-13
Identities = 41/101 (40%), Positives = 55/101 (54%)
Frame = +2
Query: 41 DAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIV 220
D PGH DFIKNMI GTSQ D AVL++AA G E QT+EH +LA +GVK + +
Sbjct: 114 DCPGHSDFIKNMICGTSQMDVAVLVIAATDGVME-------QTKEHLILAKQVGVKNMAI 166
Query: 221 GVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFV 343
+NK D E E + ++ E + G+N A +
Sbjct: 167 FINKADLVE----EDDLDLVEMEARELLSLHGFNGDATPVI 203
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 46.0 bits (104), Expect = 2e-05
Identities = 35/119 (29%), Positives = 58/119 (48%), Gaps = 2/119 (1%)
Frame = +2
Query: 29 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 208
+ +ID PGH I+ ++ ++ D A++I+ + AGI QT EH LLA
Sbjct: 74 LALIDCPGHSGLIRAVLAASTVFDMAIVII-----DVVAGIQP--QTAEHLLLASKFCPN 126
Query: 209 QLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGY--NPAAVAFVPISGWHGDNMLE 379
++I+ +NK D E +S+ E K+V +K +G N V G+ + ML+
Sbjct: 127 RVIIVLNKCDLAE----KSKISESAKKVRKGLKSMGVDENSPIVEMSLADGYFKEEMLQ 181
>Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical
protein F46B6.6a protein.
Length = 702
Score = 39.9 bits (89), Expect = 0.001
Identities = 28/70 (40%), Positives = 33/70 (47%)
Frame = +2
Query: 29 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 208
VT +D PGH F G AD VL+VAA G E QT + A V
Sbjct: 206 VTFLDTPGHAAFASMRARGAKGADIVVLVVAADDGVKE-------QTAQSIKFAKDANV- 257
Query: 209 QLIVGVNKMD 238
QL+V VNK+D
Sbjct: 258 QLVVAVNKID 267
>AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical
protein Y39G10AR.8 protein.
Length = 469
Score = 37.9 bits (84), Expect = 0.005
Identities = 22/85 (25%), Positives = 38/85 (44%)
Frame = +2
Query: 26 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 205
+V+ +D PGH + M+ G + D A L+VA QT EH + +
Sbjct: 128 HVSFVDCPGHDILMATMLNGAAVMDAAFLLVAGNEP------CPQPQTSEHLAAVEIMQL 181
Query: 206 KQLIVGVNKMDSTEPPYSESRFEEI 280
L++ NK+D + + +E+I
Sbjct: 182 NHLMILQNKVDIIKESQARENYEQI 206
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 34.7 bits (76), Expect = 0.045
Identities = 24/72 (33%), Positives = 35/72 (48%)
Frame = +2
Query: 23 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLG 202
Y + +ID PGH DF + + D +L+VAA G QT + LAF
Sbjct: 102 YLLNLIDTPGHVDFSAEVSRSLAVCDGILLLVAANQG-------VQAQTIANFWLAFEKN 154
Query: 203 VKQLIVGVNKMD 238
+ Q+I +NK+D
Sbjct: 155 I-QIIPVINKID 165
>AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical
protein Y54G2A.28 protein.
Length = 366
Score = 32.7 bits (71), Expect = 0.18
Identities = 18/43 (41%), Positives = 22/43 (51%)
Frame = -3
Query: 231 LFTPTISCLTPSVKASRACSRVCPFFEIPASNSPVPAATISTA 103
LF PT+SC+ AS S P PA N VP AT+S +
Sbjct: 13 LFDPTLSCMATQNSASATLSCANPTVAAPA-NDDVPEATLSVS 54
>Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical
protein D1081.4 protein.
Length = 381
Score = 31.5 bits (68), Expect = 0.42
Identities = 20/44 (45%), Positives = 28/44 (63%), Gaps = 3/44 (6%)
Frame = +2
Query: 2 HEVETGKYY-VTIIDAPGHRDFI--KNMITGTSQADCAVLIVAA 124
+E+E G+ V IID+ G RDFI KN+ GT AD +++ AA
Sbjct: 63 YEIEEGRVLMVQIIDSSGSRDFIGMKNLYIGT--ADAFLVVFAA 104
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 29.9 bits (64), Expect = 1.3
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +2
Query: 23 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 133
Y + IID PGH +F M AD V++V A G
Sbjct: 201 YLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEG 237
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 29.9 bits (64), Expect = 1.3
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +2
Query: 23 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 133
Y + IID PGH +F M AD V++V A G
Sbjct: 76 YLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEG 112
>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
translation initiationfactor eIF5B protein.
Length = 1074
Score = 29.9 bits (64), Expect = 1.3
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +2
Query: 35 IIDAPGHRDFIKNMITGTSQADCAVLIV 118
IID PGH F G+S D A+L+V
Sbjct: 553 IIDTPGHESFSNLRTRGSSLCDFAILVV 580
>AC024859-2|AAK29971.2| 502|Caenorhabditis elegans Set
(trithorax/polycomb) domaincontaining protein 27
protein.
Length = 502
Score = 29.5 bits (63), Expect = 1.7
Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 1/72 (1%)
Frame = -2
Query: 529 YVLQGKTESLVSGASRRKDGVEGLNKAFTFSLSFFTLN-QPSLEPWHFGGRLQHVISVPA 353
++L + A RRKD + +++ F N P L W G V VP+
Sbjct: 217 FLLAIAKNKIYEAAQRRKDARNAMETPIFYNVPFNVANFTPKLYFWAVGVVTTRVNMVPS 276
Query: 352 RNGYESDGSRIV 317
N DG+ ++
Sbjct: 277 ENQVGEDGNPVI 288
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 28.7 bits (61), Expect = 3.0
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +2
Query: 23 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 133
+ + +ID+PGH DF + D A+++V +G
Sbjct: 110 FLINLIDSPGHVDFSSEVTAALGVTDGALVVVDCVSG 146
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 28.3 bits (60), Expect = 3.9
Identities = 23/70 (32%), Positives = 30/70 (42%)
Frame = +2
Query: 29 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 208
+ IID PGH DF + D AVL++ G G G+ T L + +
Sbjct: 114 INIIDTPGHVDFTVEVERALRVLDGAVLVL-CGVG----GVQSQTFTVNRQLARYNV--- 165
Query: 209 QLIVGVNKMD 238
I VNKMD
Sbjct: 166 PFICFVNKMD 175
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 28.3 bits (60), Expect = 3.9
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +2
Query: 23 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 133
+ + +ID+PGH DF + D A+++V +G
Sbjct: 110 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 146
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 27.5 bits (58), Expect = 6.9
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +2
Query: 29 VTIIDAPGHRDFIKNMITGTSQADCAVLIV 118
+ +ID+PGH DF + + +D A+L++
Sbjct: 85 INLIDSPGHVDFSGEVTSALILSDIALLLI 114
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical
protein K10C3.5a protein.
Length = 894
Score = 27.5 bits (58), Expect = 6.9
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +2
Query: 29 VTIIDAPGHRDFIKNMITGTSQADCAVLIV 118
+ +ID+PGH DF + + +D A+L++
Sbjct: 85 INLIDSPGHVDFSGEVTSALILSDIALLLI 114
>Z75554-1|CAA99953.3| 681|Caenorhabditis elegans Hypothetical
protein ZC455.1 protein.
Length = 681
Score = 27.5 bits (58), Expect = 6.9
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +3
Query: 375 WSRPP-KCHGSRDGWLSVKKERLKVNALLRPSTPSFRLLAPLTRLSV 512
WS P K GS+D W + R +N+ R S + R + +RLSV
Sbjct: 6 WSATPIKMVGSQDSWGTPPHYRSSLNSNYRDSPANSRNTSARSRLSV 52
>U41993-3|AAA83445.1| 384|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 39 protein.
Length = 384
Score = 27.5 bits (58), Expect = 6.9
Identities = 14/50 (28%), Positives = 29/50 (58%)
Frame = -2
Query: 553 CSNTADFVYVLQGKTESLVSGASRRKDGVEGLNKAFTFSLSFFTLNQPSL 404
CS T DF+ ++ ++ S + D V ++ ++ +++F+TL+ PSL
Sbjct: 80 CSTTNDFIINIEHSSDKKFSRLLQ--DLVSRDSRTYSKAINFYTLDDPSL 127
>U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy chain
protein 1 protein.
Length = 4568
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +2
Query: 239 STEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFVPISG 355
ST P+ SRF I +V + +KK+ +P + V + G
Sbjct: 1525 STLLPFESSRFATITTDVLALMKKVAASPRILDVVNMQG 1563
>U58756-9|AAC48086.1| 667|Caenorhabditis elegans Hypothetical
protein F58F9.7 protein.
Length = 667
Score = 27.1 bits (57), Expect = 9.1
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +3
Query: 312 LVTIRLPSLSYPFLAGTEITCWSRPPKC-HGSRDGWLSVKKERLKVNALL 458
++ +R P ++ L G I P C G +GW+ K R ++ALL
Sbjct: 206 VIQVRCPR-TFQTLPGITIGDMGSKPGCWQGVENGWMEFKNHRAPLSALL 254
>U56961-6|AAK39299.1| 497|Caenorhabditis elegans Hypothetical
protein T19D7.1 protein.
Length = 497
Score = 27.1 bits (57), Expect = 9.1
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -2
Query: 274 LKSRLTVWWLSGVHFVYSYN 215
+KS L ++WL V+F +SYN
Sbjct: 250 IKSLLHIFWLPHVYFPFSYN 269
>U41272-4|AAA82448.2| 349|Caenorhabditis elegans Hypothetical
protein T03G11.3 protein.
Length = 349
Score = 27.1 bits (57), Expect = 9.1
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = -3
Query: 222 PTISCLTPSVKASRACSRVCPFFE--IPASNSPVPAATISTA 103
PT+ +TPS K S + R P + P PA+T +TA
Sbjct: 270 PTLPPMTPSSKRSSSAKRDAPLQQSSTPQQRLKTPASTTTTA 311
>L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy chain
protein.
Length = 4568
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +2
Query: 239 STEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFVPISG 355
ST P+ SRF I +V + +KK+ +P + V + G
Sbjct: 1525 STLLPFESSRFATITTDVLALMKKVAASPRILDVVNMQG 1563
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,818,134
Number of Sequences: 27780
Number of extensions: 298846
Number of successful extensions: 1180
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 1095
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1166
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1134321766
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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