Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_B09
         (541 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   2.3  
SPBC1271.04c |||deoxyhypusine synthase|Schizosaccharomyces pombe...    26   4.1  
SPAC23C4.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       25   7.2  
SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces pom...    25   9.5  
SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3 |Schizos...    25   9.5  

>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 12/40 (30%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = -1

Query: 322 LYLAYL*WFIRYNLLNLFIF-QSVLFVVYRNNVKILHLMY 206
           L+  +L +F+ ++    F+F  S +F+VY ++  ILH ++
Sbjct: 118 LFFFFLLFFLSFSFSFSFLFFLSQIFIVYFSSFPILHFLF 157


>SPBC1271.04c |||deoxyhypusine synthase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -1

Query: 259 SVLFVVYRNNVKILHLMYLDSSISIVTYY*LY 164
           SVL+  Y+NN+ I      D SI  + Y+  Y
Sbjct: 210 SVLYWAYKNNIPIYSPALTDGSIGDMLYFHTY 241


>SPAC23C4.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 104

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = +3

Query: 372 YFLMKSRLSCSYYYII 419
           YFL KS   CS YYII
Sbjct: 4   YFLSKSYDDCSRYYII 19


>SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 163

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -3

Query: 227 KNITFNVFRLFNINCYILLTLSHIY 153
           K I + V  + + +CYI+L + H Y
Sbjct: 129 KTIFYTVASIISFSCYIVLKMVHPY 153


>SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 790

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = +2

Query: 344 FKLFVK*IALFSYEISFVMFLL 409
           FK++ + +ALFSY ++F ++ L
Sbjct: 534 FKIYERGVALFSYPVAFELWNL 555


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,015,978
Number of Sequences: 5004
Number of extensions: 38474
Number of successful extensions: 79
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)