Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_B07
(441 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC8E11.07c |alp31||tubulin specific chaperone cofactor A |Schi... 55 4e-09
SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces... 32 0.034
SPCC1919.11 |mug137||BAR adaptor protein|Schizosaccharomyces pom... 29 0.42
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 28 0.55
SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual 28 0.73
SPBC337.10c |||anamorsin family protein|Schizosaccharomyces pomb... 27 0.97
SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces pombe... 27 0.97
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 27 1.3
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar... 27 1.3
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos... 26 2.2
SPCC4G3.10c |rhp42|rhp4b|DNA repair protein Rhp42|Schizosaccharo... 26 3.0
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 25 3.9
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 25 3.9
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc... 25 3.9
SPBC1778.09 |||GTPase activating protein |Schizosaccharomyces po... 25 3.9
SPCC965.03 |vma8||V-type ATPase subunit D |Schizosaccharomyces p... 25 3.9
SPAC26F1.02 |||pinin homologue|Schizosaccharomyces pombe|chr 1||... 25 5.2
SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera... 25 5.2
SPAC4H3.01 |||DNAJ domain protein Caj1/Djp1 type|Schizosaccharom... 25 5.2
SPBC1703.03c |||armadillo repeat protein, unknown biological rol... 25 5.2
SPCC737.04 |||S. pombe specific UPF0300 family protein 6|Schizos... 25 5.2
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 25 5.2
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 25 6.8
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 25 6.8
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc... 24 9.0
SPAC27F1.04c |nuf2||spindle pole body protein Nuf2|Schizosacchar... 24 9.0
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 24 9.0
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa... 24 9.0
SPBC30D10.08 |mgm101||mitochondrial nucleoid protein|Schizosacch... 24 9.0
>SPAC8E11.07c |alp31||tubulin specific chaperone cofactor A
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 119
Score = 55.2 bits (127), Expect = 4e-09
Identities = 34/110 (30%), Positives = 59/110 (53%), Gaps = 6/110 (5%)
Frame = +1
Query: 40 IRQIKIKTGVVKRITKEKIVYEKEAEQQKNRIQKIKDEGQDEHNIRKQEEVLQESLMMVP 219
+R + IKT VVKRI K+ + + + + R+Q D G+D I Q+ VL++ L +P
Sbjct: 5 VRSLVIKTNVVKRIIKDVELAHIDINEAEKRVQSKIDNGEDSAEIEHQKFVLKKHLEALP 64
Query: 220 DCQRRLAKAFTDLKNI-----LETEQNLKEHEDYI-AAEQVLKEAEPQLP 351
D RL A DL++I E L++ +Y+ A++V+++ + P
Sbjct: 65 DALVRLRNATNDLESISSDSAYEGTPELEQANEYLEKAKEVIEKEQTNFP 114
>SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 324
Score = 32.3 bits (70), Expect = 0.034
Identities = 22/82 (26%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Frame = +1
Query: 43 RQIKIKTGVVKRITKEKIVYEKEAEQQKNRIQKIK-DEGQDEHNIRKQEEVLQESLMMVP 219
+Q+K KR ++KI + QK+ ++ K D+G +E N +QE++L L +
Sbjct: 48 KQLKEGNKKQKRALQQKISQMEADLSQKHATERQKLDKGDEETNETQQEDLLNTLLQQME 107
Query: 220 DCQRRLAKAFTDLKNILETEQN 285
D + A+ + +++ L T++N
Sbjct: 108 DTKITTAEK-SSVQSSLNTKEN 128
>SPCC1919.11 |mug137||BAR adaptor protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 420
Score = 28.7 bits (61), Expect = 0.42
Identities = 20/88 (22%), Positives = 41/88 (46%)
Frame = +1
Query: 100 YEKEAEQQKNRIQKIKDEGQDEHNIRKQEEVLQESLMMVPDCQRRLAKAFTDLKNILETE 279
+E+ EQ KNR+ +KD D++ ++ E++ L + L F +N L +
Sbjct: 173 FEESTEQVKNRMIALKDVEADQY--QQLTELIVYELNFFKESTGILNTIFNS-QNSLTPQ 229
Query: 280 QNLKEHEDYIAAEQVLKEAEPQLPEIIT 363
+ ++ E + E + +P L ++ T
Sbjct: 230 KKIQSSERSVENEFLASPMDPSLSKLFT 257
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 28.3 bits (60), Expect = 0.55
Identities = 18/78 (23%), Positives = 37/78 (47%)
Frame = +1
Query: 124 KNRIQKIKDEGQDEHNIRKQEEVLQESLMMVPDCQRRLAKAFTDLKNILETEQNLKEHED 303
K+++ +GQ+E R+++ ++ L +L++ D KN+ Q L E ++
Sbjct: 6 KDQLNMTLAQGQEEAKNRRRQFQEEDQLRRNNKSSNKLSQNEEDAKNMDSVVQKLNELQN 65
Query: 304 YIAAEQVLKEAEPQLPEI 357
+ A Q L + + L I
Sbjct: 66 NVVAFQKLLQEKTPLSSI 83
>SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 408
Score = 27.9 bits (59), Expect = 0.73
Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = +1
Query: 82 TKEKIVYEKEAEQQKNRI-QKIKDEGQDE 165
TKE+ YE E+E+ +++I K K EGQ E
Sbjct: 36 TKEEGYYESESEEDEDQILNKEKKEGQSE 64
>SPBC337.10c |||anamorsin family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 288
Score = 27.5 bits (58), Expect = 0.97
Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Frame = +1
Query: 154 GQDEHNIRKQEEVLQES----LMMVPDCQRRLAKAFTDLKNILETEQNLKEHEDYIAAEQ 321
G D+ + ++E+L ES ++ VP+C+ K KN + ++EHE + Q
Sbjct: 158 GDDDQELIDEDELLDESAHDNVLKVPECKPEPGKKKRACKNCTCGLREMEEHESSKTSAQ 217
Query: 322 V 324
+
Sbjct: 218 L 218
>SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 306
Score = 27.5 bits (58), Expect = 0.97
Identities = 19/83 (22%), Positives = 41/83 (49%)
Frame = +1
Query: 52 KIKTGVVKRITKEKIVYEKEAEQQKNRIQKIKDEGQDEHNIRKQEEVLQESLMMVPDCQR 231
KIK +V++ K +++K ++ + R ++ K+E +D R + L E++ + +R
Sbjct: 3 KIKNKIVRQQQYMKALHQKNKDKLERRKERAKEEEKDPEKKRLR---LSENIPATIESKR 59
Query: 232 RLAKAFTDLKNILETEQNLKEHE 300
+ + K E + LK+ E
Sbjct: 60 VYDETIIEDKPDEELQAELKDDE 82
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 27.1 bits (57), Expect = 1.3
Identities = 21/109 (19%), Positives = 53/109 (48%)
Frame = +1
Query: 4 HEGHISTMADPRIRQIKIKTGVVKRITKEKIVYEKEAEQQKNRIQKIKDEGQDEHNIRKQ 183
+ G + ++++ + + +++ E++ EKE QQ+ + +K++++ + K+
Sbjct: 68 YNGSAEAGKEKKLQKQRAQEERIRQKEAERLKREKE-RQQREQEKKLREQEKIAAKKMKE 126
Query: 184 EEVLQESLMMVPDCQRRLAKAFTDLKNILETEQNLKEHEDYIAAEQVLK 330
E L++ + + + QRR + L+ E Q L++ + Q LK
Sbjct: 127 LEKLEKERIRLQEQQRRKEERDQKLRE-KEEAQRLRQEQILNKERQQLK 174
>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 988
Score = 27.1 bits (57), Expect = 1.3
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = +1
Query: 16 ISTMADPRIRQIKIKTGVVKRITKEKIVYEKEAEQQKNRIQKIKDEGQDEHNIRKQ 183
ISTM ++ I+ V I K +Y KE + + + I K+K EG+ + N+ K+
Sbjct: 117 ISTMLQHLQMRLSIEQQCVSGIEKIMSLYSKEQKDKTDVIIKLK-EGKQKVNLLKR 171
>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 731
Score = 26.2 bits (55), Expect = 2.2
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +1
Query: 241 KAFTDLKNILETEQNLKEHEDYIAAEQVLKEAEPQLPEIITS*ESLI 381
K+FT + + TEQ L HE+YI + A +I SLI
Sbjct: 342 KSFTPMYEDIITEQVLTAHENYIKQLEAEVSANKSFLSLINRYASLI 388
>SPCC4G3.10c |rhp42|rhp4b|DNA repair protein
Rhp42|Schizosaccharomyces pombe|chr 3|||Manual
Length = 686
Score = 25.8 bits (54), Expect = 3.0
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 43 RQIKIKTGVVKRITKEKIVYEKEAEQQKNRIQK 141
R I + TG++ ++VYE+ E +K RI+K
Sbjct: 623 RAIPVTTGIIVPEESAQMVYEEFLECEKIRIEK 655
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 25.4 bits (53), Expect = 3.9
Identities = 18/99 (18%), Positives = 50/99 (50%), Gaps = 1/99 (1%)
Frame = +1
Query: 1 RHEGHISTMADPRIRQIKIKTGVVKRITKEKIVYEKEAE-QQKNRIQKIKDEGQDEHNIR 177
+H+ + + R + +K + + + +++ YE+E E + ++ ++ E ++ N
Sbjct: 10 KHQSGNEEVKEKRQKPLKNDKKIAEELPQDEDDYEQEEENEDADQNTSVESESEELDN-E 68
Query: 178 KQEEVLQESLMMVPDCQRRLAKAFTDLKNILETEQNLKE 294
++E +Q+S+ + + K F+DL+ ++ +KE
Sbjct: 69 NEDERVQKSVNLNASSTSDIEK-FSDLQLSENIQKAIKE 106
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 25.4 bits (53), Expect = 3.9
Identities = 22/77 (28%), Positives = 42/77 (54%), Gaps = 9/77 (11%)
Frame = +1
Query: 85 KEKIVYEKEAEQQKNRIQ-KIKDEGQDEHNIRKQEEV-------LQESLMMVPDCQRRLA 240
+E++ +K +Q+ R++ +I E Q +RKQ +V LQE+++ + +
Sbjct: 1498 EEEMERKKVMQQEVLRLRSRIAKELQKNELLRKQNQVLQDQVKALQETVVSSEEAESASV 1557
Query: 241 KAFT-DLKNILETEQNL 288
A T DL+N+ +TE+ L
Sbjct: 1558 HADTKDLENLKKTEEML 1574
>SPAC27E2.06c |||methionine-tRNA ligase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 25.4 bits (53), Expect = 3.9
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +1
Query: 124 KNRIQKIKDEGQDEHNIRKQEEVLQESLMMVPDCQRRLAKAFTDL 258
K + I G DEH ++ Q E + + C R +K F DL
Sbjct: 55 KPDVSVISSTGTDEHGLKVQTVAQTEGVSPLQLCDRN-SKRFADL 98
>SPBC1778.09 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 414
Score = 25.4 bits (53), Expect = 3.9
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = +1
Query: 154 GQDEHNIRKQEEVLQESLMMVPDCQRRLA 240
G H+ RK +++ + +PDC R +A
Sbjct: 139 GNQLHSFRKTRKLILRTFKGIPDCWRSIA 167
>SPCC965.03 |vma8||V-type ATPase subunit D |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 285
Score = 25.4 bits (53), Expect = 3.9
Identities = 17/76 (22%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Frame = +1
Query: 70 VKRITKEKIVYEKEAEQQKNRIQKIKDEGQDEHNIRKQE-EVLQESLMMVPDCQRRLAKA 246
+K I E E+E + ++QK K+ + ++ K+E + +L D +A A
Sbjct: 186 IKYIESELEELEREDFTRLKKVQKTKENAEKADSVTKEEHQGGSNTLQQTKDVGGAIAPA 245
Query: 247 FTDLKNILETEQNLKE 294
K ++ +N K+
Sbjct: 246 AEVGKEVINEVENSKD 261
>SPAC26F1.02 |||pinin homologue|Schizosaccharomyces pombe|chr
1|||Manual
Length = 197
Score = 25.0 bits (52), Expect = 5.2
Identities = 9/34 (26%), Positives = 23/34 (67%)
Frame = +1
Query: 100 YEKEAEQQKNRIQKIKDEGQDEHNIRKQEEVLQE 201
+++E+E+++ +K+K +E +++E+ LQE
Sbjct: 87 FQQESEREQKSARKVKRAELEEKLAKRREQELQE 120
>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
isomerase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 361
Score = 25.0 bits (52), Expect = 5.2
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 58 KTGVVKRITKEKIVYEKEAEQQKNRIQKIKDEG 156
K V K+ TK++ E+ A +KN +K K EG
Sbjct: 180 KAQVKKKRTKDESEQEEAASPKKNNTKKQKVEG 212
>SPAC4H3.01 |||DNAJ domain protein Caj1/Djp1
type|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 25.0 bits (52), Expect = 5.2
Identities = 9/43 (20%), Positives = 27/43 (62%)
Frame = +1
Query: 64 GVVKRITKEKIVYEKEAEQQKNRIQKIKDEGQDEHNIRKQEEV 192
G + R T + + +A+ +++QK++D+G+D+ + ++ ++
Sbjct: 258 GKIARATWDTVSAAMDAKLSIDQMQKLEDKGEDQASAEERAKL 300
>SPBC1703.03c |||armadillo repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 664
Score = 25.0 bits (52), Expect = 5.2
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +3
Query: 177 KAGGGTSRIADDGPRLPEEISKSIHRSQEHIRNRTK 284
K G S++++ PRL + K R ++H+R R +
Sbjct: 610 KGSGYLSQLSEALPRLKNMVKKIDRRREKHLRFRAE 645
>SPCC737.04 |||S. pombe specific UPF0300 family protein
6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 421
Score = 25.0 bits (52), Expect = 5.2
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +1
Query: 133 IQKIKDEGQDEHNIRKQEEVLQESLMMVPDCQRRLAK 243
++++ DEGQ+ +RK +Q+ P Q R A+
Sbjct: 12 LREVDDEGQENSFLRKTTRKIQQFFKSDPGYQSRKAE 48
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 25.0 bits (52), Expect = 5.2
Identities = 16/72 (22%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = +1
Query: 85 KEKIVYEKEAEQQKNRI-QKIKDEGQDEHNIRKQEEVLQESLMMVPDCQRRLAKAFTDLK 261
KEK + +Q+ N + ++IK++ + + + + LQ ++ +LK
Sbjct: 479 KEKSALIDKKDQELNNLREQIKEQKKVSESTQSSLQSLQRDILNEKKKHEVYESQLNELK 538
Query: 262 NILETEQNLKEH 297
L+TE + EH
Sbjct: 539 GELQTEISNSEH 550
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1207
Score = 24.6 bits (51), Expect = 6.8
Identities = 12/41 (29%), Positives = 25/41 (60%)
Frame = +1
Query: 124 KNRIQKIKDEGQDEHNIRKQEEVLQESLMMVPDCQRRLAKA 246
+ R++++ E Q+E ++ E +++SLM V D LA++
Sbjct: 830 QERMEQLAIERQEEQESEEEYEEVEQSLMDVVDEMSDLAES 870
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 24.6 bits (51), Expect = 6.8
Identities = 23/103 (22%), Positives = 45/103 (43%), Gaps = 12/103 (11%)
Frame = +1
Query: 88 EKIVYEKEAEQQKNRIQKIKDEGQDEHNIRKQEE---VLQESLMMVPDCQRRLAKAFTDL 258
E ++++KE + ++++ K + HNI + E++ + K +L
Sbjct: 1068 ELVIFQKEITEYRDQLHKAFQNPEKTHNINDVKSGPLNSDENIYSTSSTTLSILKDVQEL 1127
Query: 259 KNILETEQN-----LKE----HEDYIAAEQVLKEAEPQLPEII 360
K++ E N +KE E IA E+ L+ +L +II
Sbjct: 1128 KSLHTKEANQLSERIKEISEMLEQSIATEEKLRRKNSELCDII 1170
>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 767
Score = 24.2 bits (50), Expect = 9.0
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +1
Query: 259 KNILETEQNLKEHEDYIAAEQVLKEAEPQ 345
+NI TE+N +E+ D + ++ K E Q
Sbjct: 589 RNIEVTEENKREYVDLVTVWRIQKRIEEQ 617
>SPAC27F1.04c |nuf2||spindle pole body protein
Nuf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 441
Score = 24.2 bits (50), Expect = 9.0
Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Frame = +1
Query: 103 EKEAEQQKNRIQKIKDEGQDEHNIRKQEEVL-QESLMMVPDCQRRLAKAFTDLKNILETE 279
EK +Q +R QK++ Q NIR++ +V+ QE + + +++ A + I
Sbjct: 345 EKLEHEQHSRNQKLEAAKQRMDNIREEYKVITQERNKKIQETEKKNAMIEMTEQKIAGMR 404
Query: 280 QNLKEHEDYIAAE 318
+ L+ I E
Sbjct: 405 EELESQISSITME 417
>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 24.2 bits (50), Expect = 9.0
Identities = 11/47 (23%), Positives = 27/47 (57%)
Frame = +1
Query: 67 VVKRITKEKIVYEKEAEQQKNRIQKIKDEGQDEHNIRKQEEVLQESL 207
++K IT+E + + ++ +QK K++ +DE ++ + Q+S+
Sbjct: 31 LLKDITEEDVGTDDSCNKKFLEVQKQKEDEEDEEILKGVDLTQQDSV 77
>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 941
Score = 24.2 bits (50), Expect = 9.0
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +1
Query: 136 QKIKDEGQDEHNIRKQEEVLQESLMMVPDCQRRLAKAF 249
QKI +E + E ++ EE+LQ+ V ++ L+ F
Sbjct: 500 QKINEEEETEVIAQEAEEILQDENAQVEIVKKSLSSEF 537
>SPBC30D10.08 |mgm101||mitochondrial nucleoid
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 267
Score = 24.2 bits (50), Expect = 9.0
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +1
Query: 259 KNILETEQNLKEHEDYIAAEQVLKEAEPQLPE 354
KNI E ++NL+E E +E L E+ ++PE
Sbjct: 64 KNIYEPKENLEEKE---LSEGFLDESRLEIPE 92
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,377,817
Number of Sequences: 5004
Number of extensions: 21331
Number of successful extensions: 129
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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