Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_B07
         (441 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    24   0.65 
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    22   2.6  
DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.              22   3.4  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 24.2 bits (50), Expect = 0.65
 Identities = 13/59 (22%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = +1

Query: 67  VVKRITKEKIVYEKEAEQQKNRIQKIKDEGQD--EHNIRKQEEVLQESLMMVPDCQRRL 237
           ++ R+   +  YE+ +E+   RI     EG+D  ++  R   E+   ++ ++ +  +RL
Sbjct: 338 LIHRLVYFQNEYEQPSEEDLKRITNQPSEGEDISDYKFRHITEITILTVQLIVEFSKRL 396


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 11/42 (26%), Positives = 23/42 (54%)
 Frame = +1

Query: 253 DLKNILETEQNLKEHEDYIAAEQVLKEAEPQLPEIITS*ESL 378
           ++KN+L     +KEH+  +     ++++E +  +  TS  SL
Sbjct: 167 EIKNVLTKINKIKEHDTVLVVN--IEKSENESKKYATSSNSL 206


>DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.
          Length = 150

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 290 LRFCSVSNMFLRSVNAFANL 231
           L  C V N+  RSVN F ++
Sbjct: 12  LIMCGVQNLRARSVNIFQDI 31


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,204
Number of Sequences: 438
Number of extensions: 1925
Number of successful extensions: 17
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11450997
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)