Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_B06
         (422 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A1CST0 Cluster: Putative uncharacterized protein; n=1; ...    33   2.4  
UniRef50_Q8VRN4 Cluster: Bacteriophytochrome; n=5; Rhodobacter s...    32   4.2  
UniRef50_Q09KJ3 Cluster: Sensor protein; n=13; Bacillus cereus g...    31   7.4  

>UniRef50_A1CST0 Cluster: Putative uncharacterized protein; n=1;
           Aspergillus clavatus|Rep: Putative uncharacterized
           protein - Aspergillus clavatus
          Length = 227

 Score = 33.1 bits (72), Expect = 2.4
 Identities = 19/61 (31%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
 Frame = -3

Query: 201 AGRPSRQLCDETIRKIVGS--MITQAYEHQF*KKNYAAMWNADRSETSEKLFFF*CSNYN 28
           AG  ++   DET  K++ +  +++Q  EH F K N +++W+++  E +  LF   C+ YN
Sbjct: 168 AGIQAQWAGDETDEKVLFNDILVSQMKEHGFLKPNDSSVWDSELWENNHTLFVSDCA-YN 226

Query: 27  M 25
           +
Sbjct: 227 L 227


>UniRef50_Q8VRN4 Cluster: Bacteriophytochrome; n=5; Rhodobacter
           sphaeroides|Rep: Bacteriophytochrome - Rhodobacter
           sphaeroides (Rhodopseudomonas sphaeroides)
          Length = 1016

 Score = 32.3 bits (70), Expect = 4.2
 Identities = 18/45 (40%), Positives = 23/45 (51%)
 Frame = +1

Query: 172 ITQLAGRSASVLSL*NMVAHSSRSARVDAMSSIETLLWRPAPSAV 306
           I  L G SA+V+ L     H  R+  VDAM  +   L RP+P  V
Sbjct: 434 ILDLVGASAAVVRLAGQELHFGRTPPVDAMQKVLDSLGRPSPLEV 478


>UniRef50_Q09KJ3 Cluster: Sensor protein; n=13; Bacillus cereus
           group|Rep: Sensor protein - Bacillus cereus
          Length = 585

 Score = 31.5 bits (68), Expect = 7.4
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -3

Query: 420 NIHSDHTFKDQSNIR*KFITFYSITYQGPFKYFVIISTHSGRS-GTP 283
           N H + +  D+  I  KF+TF+ + +   F Y VIIS   GR  G P
Sbjct: 240 NAHYNPSEIDEDVIVKKFLTFFGVVFLVTFVYLVIISIWYGRKFGKP 286


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 422,242,755
Number of Sequences: 1657284
Number of extensions: 8260952
Number of successful extensions: 17317
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 16997
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17315
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 19810951153
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)