Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_B06
         (422 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr 1...    26   2.1  
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    25   4.8  
SPAC15A10.09c |||SUR7 family protein|Schizosaccharomyces pombe|c...    25   4.8  
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    25   4.8  
SPBC32F12.10 |||phosphoglucomutase |Schizosaccharomyces pombe|ch...    25   6.4  
SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd...    25   6.4  
SPAC26F1.12c |||conserved eukaryotic protein|Schizosaccharomyces...    25   6.4  
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe...    24   8.5  
SPAC521.02 |||WLM domain protein|Schizosaccharomyces pombe|chr 1...    24   8.5  

>SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 486

 Score = 26.2 bits (55), Expect = 2.1
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 120 DAHMLV*SLNPQFSLWFHHTTGGTVGQRTFIIEH 221
           D  + + S NP    W    TG T+G++ F IE+
Sbjct: 133 DCSLYLPSKNPYIEKWEGLRTGSTLGKKLFQIEN 166


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +3

Query: 6   RGNFSYSYYNLNIKKKTVFPMFHFCRH 86
           R +FS+  YNL I   TVF    F RH
Sbjct: 850 RFSFSFILYNLLISTSTVFFAGFFRRH 876


>SPAC15A10.09c |||SUR7 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 288

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = +1

Query: 70  FTSVGIPHGCIVFFSKLMLICLCNH*THNFPYGFITQLAGRSASVLSL*NMVA 228
           FT +G    C+   + L ++C+ N   HN  +  I  +   + S+ S+ N  A
Sbjct: 12  FTGIGTV--CVGVGALLSILCIINQTQHNIAFQNIYFIQLNTTSIFSVANQTA 62


>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1375

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +3

Query: 36  LNIKKKTVFPMFHFCRHSTWLHSFFFKTDAHMLV*SLNPQFSL 164
           LN  K T++P+  +   S  LH++ F      L  +L P FS+
Sbjct: 52  LNRLKSTIYPVVFWVDGSEKLHAYSFTQRKISLAKNLIPLFSV 94


>SPBC32F12.10 |||phosphoglucomutase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 554

 Score = 24.6 bits (51), Expect = 6.4
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 355 LYNVSRAFQVFCNNFDAQR 299
           +Y V   ++ FCN FDA+R
Sbjct: 341 VYEVPTGWKFFCNLFDAKR 359


>SPBC2G2.08 |ade9||C-1-
           tetrahydrofolatesynthase/methylenetetrahydrofolatedehydr
           ogenase/methylenetetrahydrofolatecyclohydrolase/formylte
           trahydrofolatesynthetase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 969

 Score = 24.6 bits (51), Expect = 6.4
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -1

Query: 89  GMPTEVKHRKNCFFFNVQIII 27
           G    VKH +NC  FN+ +++
Sbjct: 767 GCSNMVKHIQNCHKFNIPVVV 787


>SPAC26F1.12c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 356

 Score = 24.6 bits (51), Expect = 6.4
 Identities = 7/10 (70%), Positives = 10/10 (100%)
 Frame = +3

Query: 147 NPQFSLWFHH 176
           +PQFS+WFH+
Sbjct: 34  HPQFSIWFHN 43


>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 848

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +1

Query: 163 YGFITQLAGRSASVLSL*NMVAHSSRSARVDAMSSIETLLWR 288
           YG ++  A R AS      +    S++A  +A++ +ETLL+R
Sbjct: 567 YGEMSDNALRLASAKLERRLQIDKSKAAHDNALNELETLLYR 608


>SPAC521.02 |||WLM domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 283

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -3

Query: 414 HSDHTFKDQSNIR*KFITFYSITYQGPFKY 325
           H    F   S +R   I  Y+  Y+GP KY
Sbjct: 127 HDRRFFSHLSTLRAALIALYAKGYKGPGKY 156


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,811,217
Number of Sequences: 5004
Number of extensions: 36798
Number of successful extensions: 81
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)