Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_B06
         (422 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0481 + 29361542-29361669,29362091-29362341,29362820-293630...    29   1.2  
10_07_0152 + 13439178-13439517,13440072-13440229,13440431-134404...    29   2.0  
01_07_0099 - 41076056-41076059,41076135-41076175,41076937-410770...    27   4.7  
05_01_0015 + 117238-117996                                             27   6.2  

>02_05_0481 +
           29361542-29361669,29362091-29362341,29362820-29363002,
           29363099-29363206,29363583-29363697,29363781-29364819,
           29364904-29365014,29365268-29365326,29366601-29366763,
           29367162-29367435,29367530-29367680,29367766-29367877,
           29367978-29368143,29368261-29368331,29368474-29368565,
           29368721-29368883,29369134-29369205,29369236-29369263,
           29369519-29369910,29369991-29370106,29370201-29370498,
           29370820-29371139,29371332-29371590,29371985-29372302,
           29372423-29372527,29372648-29372776,29374001-29374381,
           29374467-29374604,29374949-29375185,29375264-29375569
          Length = 2094

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +2

Query: 122 CSYACVIIEPTIFLMVSSHNWRDGR-PAYFHYRTWSRTARARHVSTLC 262
           C +   ++ P  F ++ + NWR  R  ++ + R W    +   +STLC
Sbjct: 16  CGFLFAVLGPLSFWILWAVNWRPWRLYSWIYARKWPAYVQGPQLSTLC 63


>10_07_0152 +
           13439178-13439517,13440072-13440229,13440431-13440477,
           13441115-13441178,13441600-13442237,13442328-13442562
          Length = 493

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -1

Query: 296 GAGRQSNVSIEDIASTRAERELCATMFYNESTL 198
           G GRQS+ S++D+       + CAT+ + E++L
Sbjct: 175 GLGRQSHRSLDDVRMNLEVLKYCATVLFLEASL 207


>01_07_0099 -
           41076056-41076059,41076135-41076175,41076937-41077041,
           41077476-41077552,41078773-41078944,41079099-41079194,
           41080268-41080465
          Length = 230

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +3

Query: 234 LALGTCRRYVFYRNITLASRSFRCASKLLQNT 329
           +A  T + Y FY ++ L SRS   A  LLQ+T
Sbjct: 191 IADATFKNYSFYLDVNLFSRSSSTAGFLLQST 222


>05_01_0015 + 117238-117996
          Length = 252

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -1

Query: 296 GAGRQSNVSIEDIASTRAERELCATMFYNESTL 198
           G G+QS+ S++D        + CAT+   ESTL
Sbjct: 148 GIGKQSHRSLDDARMNLEVLKRCATLLLLESTL 180


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,104,061
Number of Sequences: 37544
Number of extensions: 221825
Number of successful extensions: 436
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 436
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 778540620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)