Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_B06
         (422 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78420-6|CAB01711.2| 1243|Caenorhabditis elegans Hypothetical pr...    27   4.2  
Z78418-6|CAB01699.2| 1243|Caenorhabditis elegans Hypothetical pr...    27   4.2  
U40942-6|AAP68937.1|  709|Caenorhabditis elegans High temperatur...    27   4.2  
U40942-5|AAC47068.1|  729|Caenorhabditis elegans High temperatur...    27   4.2  
AY070228-1|AAL55425.1|  729|Caenorhabditis elegans HID-1 protein.      27   4.2  
Z82060-4|CAB04885.2|  434|Caenorhabditis elegans Hypothetical pr...    26   9.7  
U61953-5|AAC48080.2|  297|Caenorhabditis elegans Hypothetical pr...    26   9.7  
AC024817-2|AAU87810.1|  520|Caenorhabditis elegans Hypothetical ...    26   9.7  

>Z78420-6|CAB01711.2| 1243|Caenorhabditis elegans Hypothetical
           protein F45H11.4 protein.
          Length = 1243

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = -2

Query: 352 YNVSRAFQVFCNNFDAQRKERDARVMFL*KT*RRHVPSASCARPCSI 212
           YN   +F+   N++  +  +  A+ MF  KT    +P + C+RPC I
Sbjct: 474 YNEVGSFKSI-NDYGVEELDMTAKSMFFDKT--ELLPESVCSRPCGI 517


>Z78418-6|CAB01699.2| 1243|Caenorhabditis elegans Hypothetical
           protein F45H11.4 protein.
          Length = 1243

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = -2

Query: 352 YNVSRAFQVFCNNFDAQRKERDARVMFL*KT*RRHVPSASCARPCSI 212
           YN   +F+   N++  +  +  A+ MF  KT    +P + C+RPC I
Sbjct: 474 YNEVGSFKSI-NDYGVEELDMTAKSMFFDKT--ELLPESVCSRPCGI 517


>U40942-6|AAP68937.1|  709|Caenorhabditis elegans High
           temperature-induced dauerformation protein 1, isoform b
           protein.
          Length = 709

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 70  FTSVGIPHGCIVFFSKLMLICLCNH*THNFPYGFI 174
           FTSV  PH   +F S L ++C  +   +  PY ++
Sbjct: 215 FTSVTNPHVLPIFTSLLNIVCAYDPVGYGLPYNYL 249


>U40942-5|AAC47068.1|  729|Caenorhabditis elegans High
           temperature-induced dauerformation protein 1, isoform a
           protein.
          Length = 729

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 70  FTSVGIPHGCIVFFSKLMLICLCNH*THNFPYGFI 174
           FTSV  PH   +F S L ++C  +   +  PY ++
Sbjct: 215 FTSVTNPHVLPIFTSLLNIVCAYDPVGYGLPYNYL 249


>AY070228-1|AAL55425.1|  729|Caenorhabditis elegans HID-1 protein.
          Length = 729

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 70  FTSVGIPHGCIVFFSKLMLICLCNH*THNFPYGFI 174
           FTSV  PH   +F S L ++C  +   +  PY ++
Sbjct: 215 FTSVTNPHVLPIFTSLLNIVCAYDPVGYGLPYNYL 249


>Z82060-4|CAB04885.2|  434|Caenorhabditis elegans Hypothetical
           protein T27F6.6 protein.
          Length = 434

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +3

Query: 21  YSYYNLNIKKKTVFPMFHFCRHSTWLHSFFFKTDAHMLV*SLNPQFSL--WFHHTTGG 188
           Y +  L+ +  +V+P FH+  HS +  S       H +V +L  ++SL  + HH   G
Sbjct: 88  YDFVRLSEQVSSVYPYFHYF-HSGFTGSGVCVFSRHPIVSTLTNRYSLNGFAHHIHRG 144


>U61953-5|AAC48080.2|  297|Caenorhabditis elegans Hypothetical
           protein R08C7.4 protein.
          Length = 297

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 162 LWFHHTTGGTVGQRTFIIEHGRAQLALGTCRRY 260
           L+  H+    V +RTFI+E+G       TC  Y
Sbjct: 22  LFLQHSRQVKVIERTFILENGSQNRKRATCHYY 54


>AC024817-2|AAU87810.1|  520|Caenorhabditis elegans Hypothetical
           protein Y54G2A.38 protein.
          Length = 520

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +2

Query: 122 CSYACVIIEPTIFLMVSSHNWRDGRPAYFH 211
           CS + VI   T+ +++   NW+D + A+FH
Sbjct: 15  CSISFVIY--TLLIIMLLKNWKDFKSAFFH 42


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,069,918
Number of Sequences: 27780
Number of extensions: 208384
Number of successful extensions: 475
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 475
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 692685370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)