Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_B05
         (335 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0691 + 20076168-20076347,20076736-20077023,20077418-200774...    29   0.71 
01_07_0086 - 40992187-40992468,40992670-40992753,40992869-409930...    27   5.0  
06_01_0422 + 3034556-3034777,3034859-3035138,3036398-3036483,303...    26   6.6  

>08_02_0691 +
           20076168-20076347,20076736-20077023,20077418-20077496,
           20077681-20077736
          Length = 200

 Score = 29.5 bits (63), Expect = 0.71
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +2

Query: 155 VAFYGLFLPLYLCHGSWLIWRYIRM 229
           V FY +FL  +L   +W++WR +++
Sbjct: 122 VGFYPMFLFFFLPTAAWMVWRRVKL 146


>01_07_0086 -
           40992187-40992468,40992670-40992753,40992869-40993054,
           40993076-40993243
          Length = 239

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 9/21 (42%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
 Frame = +2

Query: 173 FLPLY-LCHGSWLIWRYIRML 232
           F+P++ LCHG+W  ++ + ML
Sbjct: 12  FIPVHGLCHGAWCWYKVVTML 32


>06_01_0422 +
           3034556-3034777,3034859-3035138,3036398-3036483,
           3036614-3036837,3036911-3036971,3037634-3037828,
           3037981-3038205
          Length = 430

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 283 KWVNLG*DIDELTDSISQHSDVSPN 209
           KW+N G D   +T+   QH  ++PN
Sbjct: 378 KWLNDGHDTSPMTNERLQHKKLTPN 402


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,997,868
Number of Sequences: 37544
Number of extensions: 125420
Number of successful extensions: 235
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 235
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 471517020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)