Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_B05
         (335 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF040650-5|AAB95008.1|  325|Caenorhabditis elegans Hypothetical ...    27   2.5  
U42832-6|AAP40542.2|  342|Caenorhabditis elegans Hypothetical pr...    27   3.3  
U42832-5|ABA03119.1|  468|Caenorhabditis elegans Hypothetical pr...    27   3.3  
U42832-4|AAA83574.4|  462|Caenorhabditis elegans Hypothetical pr...    27   3.3  
AL132860-12|CAB60508.1|  300|Caenorhabditis elegans Hypothetical...    26   7.7  

>AF040650-5|AAB95008.1|  325|Caenorhabditis elegans Hypothetical
           protein T04B8.2 protein.
          Length = 325

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +1

Query: 235 LSNPLIRQCPNLSLPTYSQYITT 303
           LS+PLIR+C +L +   + YITT
Sbjct: 133 LSHPLIRKCHHLKILGDNSYITT 155


>U42832-6|AAP40542.2|  342|Caenorhabditis elegans Hypothetical
           protein F01E11.5b protein.
          Length = 342

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 241 NPLIRQCPNLSLPTYSQYITTFSSWVHVYL 330
           N  +RQC  L LP+Y+ Y  T S ++   L
Sbjct: 45  NNTVRQCTFLDLPSYTVYSATGSFFIPTLL 74


>U42832-5|ABA03119.1|  468|Caenorhabditis elegans Hypothetical
           protein F01E11.5c protein.
          Length = 468

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 241 NPLIRQCPNLSLPTYSQYITTFSSWVHVYL 330
           N  +RQC  L LP+Y+ Y  T S ++   L
Sbjct: 171 NNTVRQCTFLDLPSYTVYSATGSFFIPTLL 200


>U42832-4|AAA83574.4|  462|Caenorhabditis elegans Hypothetical
           protein F01E11.5a protein.
          Length = 462

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 241 NPLIRQCPNLSLPTYSQYITTFSSWVHVYL 330
           N  +RQC  L LP+Y+ Y  T S ++   L
Sbjct: 171 NNTVRQCTFLDLPSYTVYSATGSFFIPTLL 200


>AL132860-12|CAB60508.1|  300|Caenorhabditis elegans Hypothetical
           protein Y56A3A.14 protein.
          Length = 300

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 202 LAHLEIHQNVDLSNPLIRQCPNLSL 276
           L HLE+   V L++ LI  C N S+
Sbjct: 185 LLHLEVKTKVTLNDILISNCSNFSI 209


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,636,624
Number of Sequences: 27780
Number of extensions: 101408
Number of successful extensions: 211
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 418861482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)