Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_B03
(545 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1289 - 25923916-25924586,25925148-25926630 28 0.12
04_04_1398 - 33245268-33245876,33247516-33247608,33247639-332478... 31 0.79
09_04_0330 + 16731390-16731699,16731774-16732080,16732182-167335... 30 1.4
07_01_1046 - 9138000-9138293,9139550-9139714,9139862-9140010,914... 30 1.4
01_01_0903 - 7103091-7103120,7104092-7104651,7105208-7105328,710... 30 1.4
05_03_0113 + 8526595-8527440,8527662-8528357 29 1.8
02_05_1178 + 34758306-34758411,34759449-34759627 29 2.4
10_06_0132 + 11073057-11073345,11073899-11073903,11074358-110744... 28 4.2
04_04_0114 + 22861300-22861476,22864952-22864969,22865187-22867163 28 4.2
03_06_0742 + 35900505-35900519,35901230-35901281,35901647-359017... 28 4.2
02_04_0335 + 22117902-22119869 28 4.2
01_05_0739 + 24807181-24809121 28 4.2
02_04_0452 + 23044190-23045227 28 5.6
01_05_0352 + 21271835-21271928,21272029-21272087,21272453-212726... 28 5.6
11_02_0040 - 7665220-7666656 27 7.4
05_03_0295 - 11830767-11831309,11831820-11831951,11832322-118323... 27 7.4
04_03_0969 + 21331989-21332674,21333090-21333194,21333269-213333... 27 7.4
03_04_0168 + 17953848-17954585 27 7.4
01_01_0452 - 3357687-3358332,3358779-3359641 27 7.4
07_03_0074 + 13068874-13069524 27 9.8
04_04_1654 - 35075409-35075926,35076396-35078694 27 9.8
02_02_0442 - 10318576-10319109 27 9.8
01_07_0269 - 42414345-42415328,42415419-42415551,42415939-424160... 27 9.8
>08_02_1289 - 25923916-25924586,25925148-25926630
Length = 717
Score = 28.3 bits (60), Expect(2) = 0.12
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +1
Query: 454 TKPTLGARCAQTSTRPGHRTARCTDSAAS 540
TKPTL + A +T+P H A T +AA+
Sbjct: 332 TKPTLPSAPASPATKPTHAAAAATAAAAT 360
Score = 23.8 bits (49), Expect(2) = 0.12
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +1
Query: 385 APAVSVRSTSTGKLSATASRSVHTKPTLGA 474
+P + +T+TG + A TKPT G+
Sbjct: 263 SPTAAAETTTTGTVPAEEGTQGATKPTKGS 292
>04_04_1398 -
33245268-33245876,33247516-33247608,33247639-33247827,
33248146-33248496
Length = 413
Score = 30.7 bits (66), Expect = 0.79
Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 3/34 (8%)
Frame = -3
Query: 315 GSRRHELSQP-PGIVS--RPGSPPCRSRGAPTRR 223
GS++ +L++ PGI+ RP SPP SRG+ RR
Sbjct: 5 GSKKRKLAEEDPGIIGAGRPPSPPSGSRGSADRR 38
>09_04_0330 +
16731390-16731699,16731774-16732080,16732182-16733561,
16734064-16734112
Length = 681
Score = 29.9 bits (64), Expect = 1.4
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = +3
Query: 345 EINLDDPCMKVHCSAGRVCEINEHGEAICNCIKEC-PYETDSRRKVCTNFNETW 503
+IN +D K +A VCE + GE + +C C + D R C + E W
Sbjct: 593 QINGEDHERKEEAAAAAVCEGSGGGERVVDC--ACGAVDDDGERMACCDICEAW 644
>07_01_1046 -
9138000-9138293,9139550-9139714,9139862-9140010,
9140363-9140510,9140659-9140727,9140827-9141087,
9141498-9141692,9142932-9143048,9143701-9144477
Length = 724
Score = 29.9 bits (64), Expect = 1.4
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +3
Query: 357 DDPCMKVHCSAGRVCEINEHGEAICNCIKE 446
DD C K+ GRV E N+ E IC+ I E
Sbjct: 212 DDFCPKIEIDGGRVYEQNKCWEDICHAIAE 241
>01_01_0903 -
7103091-7103120,7104092-7104651,7105208-7105328,
7105545-7106567
Length = 577
Score = 29.9 bits (64), Expect = 1.4
Identities = 16/57 (28%), Positives = 26/57 (45%)
Frame = +1
Query: 373 KCTAAPAVSVRSTSTGKLSATASRSVHTKPTLGARCAQTSTRPGHRTARCTDSAASA 543
KC AP S+ + T AT S++T+ G T + RCTD++ ++
Sbjct: 512 KCRTAPYFSLEALLTDIRDATRKLSIYTEDDDGCTTKDTLYMKLEKDLRCTDASINS 568
>05_03_0113 + 8526595-8527440,8527662-8528357
Length = 513
Score = 29.5 bits (63), Expect = 1.8
Identities = 14/29 (48%), Positives = 14/29 (48%)
Frame = +2
Query: 203 GASPRGHLRVGAPRERHGGEPGRETIPGG 289
G PRG GA R GG PGR GG
Sbjct: 71 GIRPRGSRSFGARRGGFGGRPGRSGFGGG 99
>02_05_1178 + 34758306-34758411,34759449-34759627
Length = 94
Score = 29.1 bits (62), Expect = 2.4
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = -3
Query: 333 HRVTHSGSRRHELSQPPGIVSRPGSPPCRSR 241
HRVT +GS RHE S+ + S P PP S+
Sbjct: 61 HRVTQAGSSRHEPSKRLALPSSP--PPLESQ 89
>10_06_0132 +
11073057-11073345,11073899-11073903,11074358-11074404,
11074843-11074967,11078036-11078592
Length = 340
Score = 28.3 bits (60), Expect = 4.2
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = -2
Query: 364 GSSRLISLSGASRDSFRISETRALSASWNRLSSRLSAMP 248
G S +SLS A + ++E R L A +R SSR SA P
Sbjct: 11 GLSHSLSLSRADLAAVVVAEPRLLYAKADRESSRFSARP 49
>04_04_0114 + 22861300-22861476,22864952-22864969,22865187-22867163
Length = 723
Score = 28.3 bits (60), Expect = 4.2
Identities = 20/62 (32%), Positives = 27/62 (43%)
Frame = -3
Query: 405 SHRHGRRCSALSCTDRQD*FHCQEHRVTHSGSRRHELSQPPGIVSRPGSPPCRSRGAPTR 226
+H GRRC L CT + ++ + H G RR E P +R S C G +
Sbjct: 374 AHGGGRRCEELGCTKSAE--GKTDYCIAHGGGRRCEHDGCPK-AARGKSGRCIKHGG-GK 429
Query: 225 RC 220
RC
Sbjct: 430 RC 431
>03_06_0742 +
35900505-35900519,35901230-35901281,35901647-35901772,
35902303-35902613,35902745-35902988,35903726-35903976,
35904071-35904277,35904546-35904713,35904798-35905127,
35905266-35905400
Length = 612
Score = 28.3 bits (60), Expect = 4.2
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -1
Query: 455 VWTLLDAVADSFPVLVDLTDTAGAAVHFHARIVKIDFIVRSI 330
VW + FP L +D A A+ F + VK+D+ +S+
Sbjct: 169 VWVYKKTSEEKFPTLKKYSDKAPASDKFASHEVKVDYEYKSV 210
>02_04_0335 + 22117902-22119869
Length = 655
Score = 28.3 bits (60), Expect = 4.2
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -3
Query: 405 SHRHGRRCSALSCTDRQD*FHCQEHRVTHSGSRR 304
+H GRRC L CT + +H + H G RR
Sbjct: 307 AHGGGRRCMQLGCTKSAE--GKTDHCIAHGGGRR 338
>01_05_0739 + 24807181-24809121
Length = 646
Score = 28.3 bits (60), Expect = 4.2
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -3
Query: 405 SHRHGRRCSALSCTDRQD*FHCQEHRVTHSGSRR 304
+H GRRC L CT + +H + H G RR
Sbjct: 306 AHGGGRRCQFLGCTKSAE--GRTDHCIAHGGGRR 337
>02_04_0452 + 23044190-23045227
Length = 345
Score = 27.9 bits (59), Expect = 5.6
Identities = 14/39 (35%), Positives = 17/39 (43%)
Frame = -3
Query: 345 HCQEHRVTHSGSRRHELSQPPGIVSRPGSPPCRSRGAPT 229
H H +HS SR H S P + P PP + A T
Sbjct: 178 HGHAHSHSHSHSRAHNPSTRPPTSAPPPPPPAAASSATT 216
>01_05_0352 +
21271835-21271928,21272029-21272087,21272453-21272641,
21273568-21273738,21274542-21274694
Length = 221
Score = 27.9 bits (59), Expect = 5.6
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +3
Query: 225 SESEHLENGMAESLDERRFQEAERARVSEILNESRD 332
S E LE+GMAE+L Q++ R++E N++ D
Sbjct: 100 SREELLESGMAETLGVSADQKSRLLRITEKQNKTTD 135
>11_02_0040 - 7665220-7666656
Length = 478
Score = 27.5 bits (58), Expect = 7.4
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = +1
Query: 400 VRSTSTGKLSATASRSV--HTKPTLGARCAQTSTRPGHRTARCTDSA 534
V+ G +A R+V HT + AR A RP TARC D++
Sbjct: 345 VQERGHGWAAAAVGRAVAAHTDAGIRARVAAWGARPTVYTARCFDAS 391
>05_03_0295 -
11830767-11831309,11831820-11831951,11832322-11832375,
11842285-11843169
Length = 537
Score = 27.5 bits (58), Expect = 7.4
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -2
Query: 142 WTSASTVQMTATTRVNTNSLFILTPWLICVVL 47
W T T T +++ N +TPW I +VL
Sbjct: 413 WLMDRTDPKTMTIQISENKKIAITPWKISIVL 444
>04_03_0969 +
21331989-21332674,21333090-21333194,21333269-21333391,
21333458-21333628,21333710-21333839,21333926-21334135,
21334700-21334855
Length = 526
Score = 27.5 bits (58), Expect = 7.4
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -3
Query: 339 QEHRVTHSGSRRHELSQPPGIVSRPGSPPCRSRGAPTR 226
+EHR+T ++H+ QPP R G P R +R
Sbjct: 120 KEHRITFR-EQQHQPPQPPPYHQRSGGPSSRGGSGESR 156
>03_04_0168 + 17953848-17954585
Length = 245
Score = 27.5 bits (58), Expect = 7.4
Identities = 17/46 (36%), Positives = 21/46 (45%)
Frame = +2
Query: 146 TSSTPSALTYDDYGAADVGGASPRGHLRVGAPRERHGGEPGRETIP 283
T+S + DD A GG SPR PR +HGG G + P
Sbjct: 5 TASFKHVVDDDDPAARGTGGGSPR------QPRRKHGGGGGGKINP 44
>01_01_0452 - 3357687-3358332,3358779-3359641
Length = 502
Score = 27.5 bits (58), Expect = 7.4
Identities = 21/77 (27%), Positives = 35/77 (45%)
Frame = +3
Query: 225 SESEHLENGMAESLDERRFQEAERARVSEILNESRDAPDNEINLDDPCMKVHCSAGRVCE 404
S+ HL++ +SLDE+ E V +L R P+ +++ P ++H + V
Sbjct: 77 SKPVHLKSYTQQSLDEQEMLELFVDIVDWVL---RSGPNKKLSFQFPRAQIHGNLKDVFN 133
Query: 405 INEHGEAICNCIKECPY 455
I A CI E P+
Sbjct: 134 IVFLSLAFLVCIYEAPH 150
>07_03_0074 + 13068874-13069524
Length = 216
Score = 27.1 bits (57), Expect = 9.8
Identities = 13/22 (59%), Positives = 13/22 (59%)
Frame = +2
Query: 197 VGGASPRGHLRVGAPRERHGGE 262
VGGA PRG R GA GGE
Sbjct: 127 VGGADPRGRRRGGAAEGWGGGE 148
>04_04_1654 - 35075409-35075926,35076396-35078694
Length = 938
Score = 27.1 bits (57), Expect = 9.8
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +1
Query: 379 TAAPAVSVRSTSTGKLSATASRSVHTKPTLGARCAQTSTRPG 504
T +P+V V T + TA S +K T G+ ++ T PG
Sbjct: 431 TFSPSVKVNVTGNLNFNGTAPGSAPSKDTPGSSSSRAPTLPG 472
>02_02_0442 - 10318576-10319109
Length = 177
Score = 27.1 bits (57), Expect = 9.8
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -2
Query: 349 ISLSGASRDSFRISETRALSASWNRLSSRLSAMP 248
+SLS A + ++E R L A +R SSR SA P
Sbjct: 14 LSLSRADLAAVVVAEPRLLCAKADRASSRFSARP 47
>01_07_0269 -
42414345-42415328,42415419-42415551,42415939-42416007,
42416459-42416672,42416785-42417040
Length = 551
Score = 27.1 bits (57), Expect = 9.8
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +2
Query: 188 AADVGGASPRGHLRVGAPRERHGGEPGRETIPGG*ESSC 304
A D GG G + G+P E G +P + PG +C
Sbjct: 11 APDAGGGGGGGESKKGSPCEECGEQPWKYRCPGCSRLTC 49
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,046,972
Number of Sequences: 37544
Number of extensions: 319297
Number of successful extensions: 1286
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1284
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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