Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_B02
         (501 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c...    53   3e-08
SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces p...    26   3.7  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   4.8  
SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol pyrop...    25   6.4  
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    25   6.4  

>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 479

 Score = 52.8 bits (121), Expect = 3e-08
 Identities = 28/72 (38%), Positives = 41/72 (56%)
 Frame = +3

Query: 12  GSIYDWVQYHRLHHAHFATEDDPYNYKKGFLHCHILTRMRKLSPHQEKLKESIDMSDLES 191
           GSI  W + HR HH +  T+ DPYN KKGF + H+   +   +P   ++  S D+SDL S
Sbjct: 138 GSIRWWSRDHRAHHRYTDTDKDPYNVKKGFWYAHVGWMIILQNP--RRIGRS-DVSDLNS 194

Query: 192 DSVVKFFKKFYI 227
           D  V F  + ++
Sbjct: 195 DPFVMFNHRHFL 206


>SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 438

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 7/46 (15%)
 Frame = -2

Query: 296 HCHPNIQEVHLEAAIKITRRIEA--NIKF--FEKF---YYGIALEI 180
           HCHP I E  +E A ++T    A  N KF  F K+   Y+G  + I
Sbjct: 65  HCHPKIIEALVEQAQRVTLSSRAFYNDKFGPFAKYITEYFGYEMVI 110


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 3655

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = +2

Query: 374 VCLWGLKPGEKSPTDSNSVSLLTTTLWPHYQYLIPYEY 487
           +CL  L P    P  +  +  L   LW H Q L PY Y
Sbjct: 812 LCLDNLTPDFLDPIMAPYIEDLMNALWSHLQPL-PYNY 848


>SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol
           pyrophosphate phosphatase fusion 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
 Frame = +3

Query: 6   GVGSIYDWVQYHRLHHAHFATED--DPYNYKKGFL-HCHILTRMRKLSPHQEKLKE--SI 170
           G+G  + W+Q H +   ++ TE   D Y     FL H +        + + EKLKE  ++
Sbjct: 159 GLGIWHSWIQNHVVQAQYYRTEKQYDKYLENNKFLTHLNNEVLHDNYTRNIEKLKELDNL 218

Query: 171 DMSDLESDSVVK 206
                E D +V+
Sbjct: 219 VAVSFERDDIVE 230


>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 8/34 (23%), Positives = 17/34 (50%)
 Frame = +3

Query: 57  HFATEDDPYNYKKGFLHCHILTRMRKLSPHQEKL 158
           H+  ++DP N    + H H+   + K + H  ++
Sbjct: 320 HYINDNDPSNSYSSYQHSHVHDFIHKNNTHSNRV 353


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,198,812
Number of Sequences: 5004
Number of extensions: 45583
Number of successful extensions: 116
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)