Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_B02
         (501 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0159 + 18716055-18716272,18716900-18718529,18718622-187186...    29   1.6  
02_05_1334 - 35765973-35766068,35766272-35766353,35766448-357664...    28   3.7  
09_04_0189 + 15438538-15438591,15438671-15438891,15438982-154392...    28   4.8  
04_04_0788 + 28064684-28066584,28066692-28066815,28066908-280672...    27   6.4  
02_03_0390 + 18448671-18448889,18449567-18449632,18449702-184497...    27   8.5  
02_01_0601 + 4465775-4465924,4466070-4466531,4466613-4467445,446...    27   8.5  

>01_05_0159 +
           18716055-18716272,18716900-18718529,18718622-18718693,
           18718800-18719213
          Length = 777

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = -2

Query: 308 QWPKHCHPNIQEVHLEAAIKITRRIEANIKFFEKFYYGIAL 186
           Q   HC+    +  ++ A+K     E  ++ F+ FYYG+ +
Sbjct: 720 QCSSHCNEVFFQCEMDKALKEVAGTEERLEMFKIFYYGVGI 760


>02_05_1334 -
           35765973-35766068,35766272-35766353,35766448-35766485,
           35766601-35766657,35766795-35766858,35766947-35767043,
           35767604-35767656,35767837-35767921,35768649-35769675
          Length = 532

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +3

Query: 132 KLSPHQEKLKESIDMSDLESDSVVKFFKKFYIGLYT 239
           ++    E+L +S+D+ DLE D   ++ +K   GLYT
Sbjct: 425 RVKAETERL-DSLDLDDLEMDEDERYNRKLEAGLYT 459


>09_04_0189 +
           15438538-15438591,15438671-15438891,15438982-15439214,
           15439322-15439541,15440091-15440212,15441086-15441339,
           15441425-15441532,15441622-15441828,15441929-15442213,
           15442312-15442467
          Length = 619

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 10/39 (25%), Positives = 18/39 (46%)
 Frame = -3

Query: 205 FTTESLSRSDMSIDSFSFSWCGLSFLIRVSMWQWRKPFL 89
           F   + + +  S+  F       +FL+ + MW W K F+
Sbjct: 308 FVLRTFASTPFSVQPFLLPMWPFAFLVMLMMWAWSKTFV 346


>04_04_0788 +
           28064684-28066584,28066692-28066815,28066908-28067285,
           28067286-28067488,28067615-28067897
          Length = 962

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -1

Query: 156 VFPGAGSVSSFELVCGSGGN-LFYNCTGRPP 67
           V PG+GSVSS     G GGN   ++   RPP
Sbjct: 80  VVPGSGSVSSASSSPGGGGNGESFSFKNRPP 110


>02_03_0390 + 18448671-18448889,18449567-18449632,18449702-18449761,
            18449864-18449959,18452287-18452447,18452669-18452790,
            18452872-18453239,18453653-18453739,18453835-18453969,
            18454349-18454471,18454771-18454854,18455023-18455187,
            18455310-18455486,18455660-18455773,18455912-18456016,
            18457056-18457174,18457244-18457385,18457461-18457555,
            18457757-18457862,18458125-18458204,18458285-18458461,
            18459828-18459912,18460024-18460104,18460208-18460351,
            18460468-18460563,18460654-18460854,18461462-18461895,
            18462417-18462478,18462622-18462872,18462956-18463030,
            18463110-18463300,18463696-18463867,18463956-18464020,
            18464646-18464778,18464861-18464962,18465047-18465130,
            18465656-18465730,18465818-18465877,18465967-18466223,
            18466560-18466608,18466781-18466941,18467013-18467079,
            18467174-18467299,18467422-18467592,18468566-18468769,
            18469059-18469165,18469608-18469737,18469774-18469959,
            18470704-18470742
          Length = 2202

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 18   IYDWVQYHRLHHAHFATEDDPYNY 89
            I++WV+   LH+ H     D YNY
Sbjct: 1862 IFEWVELEPLHYWHSLLFMDQYNY 1885


>02_01_0601 +
           4465775-4465924,4466070-4466531,4466613-4467445,
           4467528-4467597,4467613-4467698,4467865-4468036,
           4468481-4468519,4469410-4469430
          Length = 610

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = +2

Query: 23  RLGSVPQTTSRTLRYGGRPVQL*KRFPPLPHTNSNEETEPAPGKTKGV 166
           R+G  PQ TS   +YG + +Q  ++   +P   ++   E A G+ +G+
Sbjct: 4   RIGWAPQGTSARRQYGPKKMQPLQQRMSMPRFQTSLNKELATGRGQGL 51


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,047,209
Number of Sequences: 37544
Number of extensions: 294097
Number of successful extensions: 804
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)