Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_B01
(404 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc... 27 0.84
SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 27 1.5
SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32 |Schi... 26 1.9
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 26 1.9
SPBC19C2.04c |ubp11||ubiquitin C-terminal hydrolase Ubp11|Schizo... 26 2.6
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ... 25 3.4
SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces pom... 25 4.5
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr... 25 5.9
SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces... 24 7.8
>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 688
Score = 27.5 bits (58), Expect = 0.84
Identities = 22/79 (27%), Positives = 35/79 (44%)
Frame = +1
Query: 19 KAENINGKTTTSASLEVSVAPKFTLTPKKQNVSPGDNVEFTCSAKGVPKPSLQWYRNTLL 198
K EN N +S+ E++ + +P K P + E S + + KPS T +
Sbjct: 64 KEENSNTSKASSSEDEIAPKYLYPSSPSKSTKKPHNETEPLLSPQFIDKPS---NIETPV 120
Query: 199 LLENNKVIFNNNNQSLTLL 255
+E+ V NN QS + L
Sbjct: 121 KIESPHVSQNNTFQSYSEL 139
>SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 244
Score = 26.6 bits (56), Expect = 1.5
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +1
Query: 19 KAENINGKTTTSASLEVSVAPKFTLTPKKQNVSPGD 126
K++N + + TT L PK TP K ++S G+
Sbjct: 37 KSQNPSEEATTVNELSCEAKPKLLFTPTKSSLSIGN 72
>SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 749
Score = 26.2 bits (55), Expect = 1.9
Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
Frame = -1
Query: 206 SSNNNVFLYHCSDGLGTP-LAEQVNST-LSPGLTFCFFGVRVNLGATETSSDADVVVFPL 33
S N F Y P L + +N L P L C F + L ++ SS +FP+
Sbjct: 347 SKNLTTFPYRIQSQKILPTLLDHLNDQKLVPSLLPCIFEISKGLDSSIFSSKVFTAIFPI 406
Query: 32 MFSALQVYP 6
+ SA YP
Sbjct: 407 I-SAANSYP 414
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 26.2 bits (55), Expect = 1.9
Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
Frame = +1
Query: 52 SASLEVSVAPKFTLTPKKQNVSPGDNVEFTCSA-KGVPKPSL-QWYRNTLLLLENNKVIF 225
S+S + VA K + N S + + T K + L W R L ++ +
Sbjct: 418 SSSFPLLVASKISRLTSIANTSSDERIRLTTELLKSIKITKLFGWERPMLSRIQEKRSFE 477
Query: 226 NNNNQSLTLLDV 261
NN SLTL D+
Sbjct: 478 VNNMYSLTLFDI 489
>SPBC19C2.04c |ubp11||ubiquitin C-terminal hydrolase
Ubp11|Schizosaccharomyces pombe|chr 2|||Manual
Length = 350
Score = 25.8 bits (54), Expect = 2.6
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = -3
Query: 138 KLHIISWTNILFFWCESKLRSNRNFK*RRCGCLSINVFGFTSIS 7
K H W+ +L F +S K + C CL+I++ T+ S
Sbjct: 146 KPHTYKWSKVLSFPVDSPFIGTMEQKVQCCQCLAISISYSTATS 189
>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 25.4 bits (53), Expect = 3.4
Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = +1
Query: 43 TTTSASLEVSVAPKFTLTPKKQNVSPGDNVEFT-CSAKGVPKPS 171
+TT SL S+AP + PKK NV F S VP S
Sbjct: 263 STTPISLSNSIAPSLSFQPKKARYESA-NVSFNDTSFTNVPTSS 305
>SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 464
Score = 25.0 bits (52), Expect = 4.5
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -1
Query: 101 FGVRVNLGATETSSDADVVVFP 36
FGV + +GAT++ D+ V + P
Sbjct: 433 FGVAIKMGATKSDFDSCVAIHP 454
>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1225
Score = 24.6 bits (51), Expect = 5.9
Identities = 11/34 (32%), Positives = 14/34 (41%)
Frame = -2
Query: 379 HNYVRGYYLKVCPWLVKHRSQ*YPHRSLLYNDKF 278
H VR + CPWL R Q +L+ F
Sbjct: 120 HQKVRNILAQYCPWLTDERLQLCIELKILFMQHF 153
>SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 735
Score = 24.2 bits (50), Expect = 7.8
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -1
Query: 140 VNSTLSPGLTFCFFGVRVNLGATET 66
VN++ GLTFC +R LGA T
Sbjct: 687 VNASYEVGLTFCNSHMRRALGACTT 711
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.313 0.130 0.381
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,593,147
Number of Sequences: 5004
Number of extensions: 29688
Number of successful extensions: 75
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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