Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_B01
         (404 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0141 + 1631649-1631727,1633607-1633651,1633841-1634454,163...    28   3.2  
08_02_0210 + 14324539-14324609,14324735-14325740,14325838-143273...    27   4.3  
09_04_0353 + 16915618-16916934                                         27   7.5  
09_06_0194 - 21469815-21470117,21470226-21470376,21470463-214707...    26   9.9  
09_06_0113 + 20938357-20938730,20938820-20939057,20939140-209392...    26   9.9  

>04_01_0141 +
           1631649-1631727,1633607-1633651,1633841-1634454,
           1634569-1634627,1634721-1634911,1636739-1637073
          Length = 440

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 149 AEQVNSTLSPGLTFCFFG 96
           AE +NST+   + FCFFG
Sbjct: 269 AENINSTVKGKIVFCFFG 286


>08_02_0210 +
           14324539-14324609,14324735-14325740,14325838-14327390,
           14327473-14327601,14328345-14328510
          Length = 974

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +1

Query: 241 SLTLLDVAKDDEGIYHCR 294
           S+  +DV +DD+GIY CR
Sbjct: 455 SVVEIDVQEDDDGIYFCR 472


>09_04_0353 + 16915618-16916934
          Length = 438

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -1

Query: 164 LGTP-LAEQVNSTLSPGLTFCFFGVRVNLGATETSSDADVVVFPLM 30
           LG+P  +  + S +SP  +  +FG    L +T TSS   V   P +
Sbjct: 225 LGSPRFSYCLTSFMSPATSRLYFGAYATLNSTNTSSSGPVQSTPFI 270


>09_06_0194 -
           21469815-21470117,21470226-21470376,21470463-21470700,
           21470784-21470991,21471107-21471309,21471407-21471508,
           21471622-21472945
          Length = 842

 Score = 26.2 bits (55), Expect = 9.9
 Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
 Frame = -3

Query: 159 YTFS*TGKLHIISWTNILFFWCESKLRSNRNFK*RRCGCLS-INVFGFTSISS 4
           Y  S +G LH+ SW+N+   W      +N  F  R C        FG+   S+
Sbjct: 263 YLMSYSGDLHLQSWSNVSSAWV-----TNARFPRRDCSLFGYCGAFGYCGNST 310


>09_06_0113 +
           20938357-20938730,20938820-20939057,20939140-20939264,
           20939682-20939715,20939804-20939850,20939948-20940079,
           20940420-20940484,20940613-20940685,20940790-20940946
          Length = 414

 Score = 26.2 bits (55), Expect = 9.9
 Identities = 20/87 (22%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
 Frame = +1

Query: 19  KAENINGKTTTSASLEVSVAPKFTLTPKKQNVSPGDNVEFTCSAKGVPKPSLQWYRNTLL 198
           +++ I   +  + ++E +++   +  P+    S       +CS K +PKP LQ       
Sbjct: 327 QSQGIRFLSHVTGNIESNLSSNGSTNPQTSRFSSNKR-STSCSTKSMPKPGLQKQEQ--- 382

Query: 199 LLENNKVIFN-NNNQSLTLLDVAKDDE 276
             +N K+       +++ L DV+ DDE
Sbjct: 383 --DNKKMKMTCPPKKTIELDDVSSDDE 407


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.313    0.130    0.381 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,645,846
Number of Sequences: 37544
Number of extensions: 170307
Number of successful extensions: 316
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 316
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 706675332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)