Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_A24
(390 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p... 75 4e-15
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 48 4e-07
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom... 47 9e-07
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 47 9e-07
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 46 3e-06
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 38 4e-04
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 38 5e-04
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 36 0.002
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 35 0.004
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 34 0.007
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 34 0.009
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 33 0.012
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 31 0.083
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch... 30 0.11
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 29 0.25
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 27 1.0
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr... 27 1.4
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 26 2.4
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 25 3.1
>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 74.9 bits (176), Expect = 4e-15
Identities = 33/35 (94%), Positives = 34/35 (97%)
Frame = +2
Query: 218 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPT 322
M TIKCVVVGDGAVGKTCLLISYTTNKFPS+YVPT
Sbjct: 1 MPTIKCVVVGDGAVGKTCLLISYTTNKFPSDYVPT 35
Score = 46.8 bits (106), Expect = 1e-06
Identities = 20/21 (95%), Positives = 20/21 (95%)
Frame = +1
Query: 328 FDNYAVTVMIGGEPYTLGLFD 390
FDNYAVTVMIG EPYTLGLFD
Sbjct: 37 FDNYAVTVMIGDEPYTLGLFD 57
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 48.4 bits (110), Expect = 4e-07
Identities = 23/38 (60%), Positives = 27/38 (71%), Gaps = 1/38 (2%)
Frame = +2
Query: 212 SKMQTIK-CVVVGDGAVGKTCLLISYTTNKFPSEYVPT 322
SK +T K VVVGDG GKTCLLI +++ FP YVPT
Sbjct: 9 SKSETSKKLVVVGDGGCGKTCLLIVFSSGTFPERYVPT 46
>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 47.2 bits (107), Expect = 9e-07
Identities = 20/31 (64%), Positives = 23/31 (74%)
Frame = +2
Query: 230 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPT 322
K V+VGDGA GKTCLLI ++ FP YVPT
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPT 38
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 47.2 bits (107), Expect = 9e-07
Identities = 20/31 (64%), Positives = 23/31 (74%)
Frame = +2
Query: 230 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPT 322
K V+VGDGA GKTCLLI ++ FP YVPT
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPT 38
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 45.6 bits (103), Expect = 3e-06
Identities = 21/31 (67%), Positives = 23/31 (74%)
Frame = +2
Query: 230 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPT 322
K VVVGDGA GKT LL +T FP+EYVPT
Sbjct: 10 KLVVVGDGACGKTSLLSVFTLGYFPTEYVPT 40
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 38.3 bits (85), Expect = 4e-04
Identities = 17/31 (54%), Positives = 20/31 (64%)
Frame = +2
Query: 230 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPT 322
K V++GDGA GKT LL +T FP Y PT
Sbjct: 15 KIVILGDGAAGKTSLLNVFTKGYFPQVYEPT 45
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 37.9 bits (84), Expect = 5e-04
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +2
Query: 227 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPT 322
+K V++GD VGKTCL+ + KF EY T
Sbjct: 9 LKVVILGDSGVGKTCLMNQFVNQKFSREYKAT 40
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 36.3 bits (80), Expect = 0.002
Identities = 17/35 (48%), Positives = 21/35 (60%)
Frame = +2
Query: 218 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPT 322
++ K VVVGDG VGK+ L I + F EY PT
Sbjct: 6 LREYKLVVVGDGGVGKSALTIQLIQSHFVDEYDPT 40
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 35.1 bits (77), Expect = 0.004
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = +2
Query: 227 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPT 322
IK +++GD VGK+CLL+ ++ + F ++ T
Sbjct: 10 IKLLLIGDSGVGKSCLLLRFSEDSFTPSFITT 41
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 34.3 bits (75), Expect = 0.007
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +2
Query: 224 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPT 322
T K V+VGDG GKT + + T +F +Y+ T
Sbjct: 9 TFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIAT 41
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 33.9 bits (74), Expect = 0.009
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +2
Query: 224 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTSALIIM 340
TIK ++GD ++GKT L+++Y F E T + M
Sbjct: 10 TIKVGMIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFM 48
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 33.5 bits (73), Expect = 0.012
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +2
Query: 230 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPT 322
K +++GD VGK+CLL+ + + + Y+ T
Sbjct: 10 KLLLIGDSGVGKSCLLLRFADDTYTESYIST 40
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 30.7 bits (66), Expect = 0.083
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +2
Query: 230 KCVVVGDGAVGKTCLLISYTTNKFPSE 310
K V++GD VGK+ LL+ +T N+F E
Sbjct: 12 KTVLIGDSGVGKSNLLMRFTRNEFNIE 38
>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 185
Score = 30.3 bits (65), Expect = 0.11
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 230 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPT 322
+ V+G +VGK+ L + Y N F Y PT
Sbjct: 8 RIAVLGSRSVGKSSLTVQYVENHFVESYYPT 38
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 29.1 bits (62), Expect = 0.25
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = +2
Query: 233 CVVVGDGAVGKTCLL 277
C++VGD A GKTC+L
Sbjct: 1872 CILVGDTATGKTCIL 1886
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 27.1 bits (57), Expect = 1.0
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = +2
Query: 230 KCVVVGDGAVGKTCLLISYTTNKF 301
K V++GD AVGK+ L++ + ++F
Sbjct: 16 KLVLLGDSAVGKSSLVLRFVKDQF 39
>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1471
Score = 26.6 bits (56), Expect = 1.4
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = +2
Query: 119 AEVAMVSKRVVSNSKKITSKYLVYDKKNYY*SKMQTIKCVV 241
A + VSK++ SNSKK+T ++ +K N + + KC++
Sbjct: 913 ASITEVSKQLKSNSKKVT---VLRNKLNILNNSLSKWKCLI 950
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 25.8 bits (54), Expect = 2.4
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 233 CVVVGDGAVGKTCLLISYTTN 295
C VVG + GKT LL S+ N
Sbjct: 424 CFVVGSKSCGKTALLSSFINN 444
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 25.4 bits (53), Expect = 3.1
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = +2
Query: 227 IKCVVVGDGAVGKTCLLISYTTNKFPSE 310
+K V+ G GK+CLL + N++ +
Sbjct: 10 VKIVLAGPSGTGKSCLLQRFVKNQWDDQ 37
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,584,537
Number of Sequences: 5004
Number of extensions: 29309
Number of successful extensions: 59
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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