Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_A21
(138 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.08c |rpl3401|rpl34, rpl34-1|60S ribosomal protein L34|S... 54 2e-09
SPCC1322.15 |rpl3402|rpl34, rpl34-2|60S ribosomal protein L34|Sc... 54 2e-09
SPAC2E1P5.03 |||DNAJ domain protein Erj5|Schizosaccharomyces pom... 26 0.59
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti... 25 1.4
SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein Vps33|S... 25 1.8
SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 23 4.2
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi... 23 5.5
SPCC1322.02 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 23 5.5
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 23 5.5
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k... 22 9.6
SPBC1539.09c |trp1||anthranilate synthase component II|Schizosac... 22 9.6
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 22 9.6
>SPAC23A1.08c |rpl3401|rpl34, rpl34-1|60S ribosomal protein
L34|Schizosaccharomyces pombe|chr 1|||Manual
Length = 112
Score = 54.4 bits (125), Expect = 2e-09
Identities = 21/37 (56%), Positives = 31/37 (83%)
Frame = +2
Query: 23 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKK 133
M QR+T+RRRL+YNT+SN+ RI++TPG + Y ++KK
Sbjct: 1 MAQRVTYRRRLAYNTRSNRTRIIKTPGNNIRYLHIKK 37
>SPCC1322.15 |rpl3402|rpl34, rpl34-2|60S ribosomal protein
L34|Schizosaccharomyces pombe|chr 3|||Manual
Length = 111
Score = 54.4 bits (125), Expect = 2e-09
Identities = 21/37 (56%), Positives = 31/37 (83%)
Frame = +2
Query: 23 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKK 133
M QR+T+RRRL+YNT+SN+ RI++TPG + Y ++KK
Sbjct: 1 MAQRVTYRRRLAYNTRSNKTRIIKTPGNNIRYLHIKK 37
>SPAC2E1P5.03 |||DNAJ domain protein Erj5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 303
Score = 26.2 bits (55), Expect = 0.59
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +2
Query: 44 RRRLSYNTKSN-QRRIVRTPGGRLVY 118
R+ SY T + +RIV+ PGGR +Y
Sbjct: 161 RQHESYATSARGSKRIVQVPGGRRIY 186
>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1086
Score = 25.0 bits (52), Expect = 1.4
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -1
Query: 138 LGFLTYWYTKRPPGVRTILL 79
+GFL Y+Y K P G R +L
Sbjct: 133 VGFLPYFYVKAPVGFRPEML 152
>SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein
Vps33|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 24.6 bits (51), Expect = 1.8
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +1
Query: 13 KLQNGAAAYIQTTFVLQHKVKPKENSTN 96
KLQN Y+ + Q KV PK TN
Sbjct: 504 KLQNMPGTYVDKWTLDQEKVMPKNLKTN 531
>SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 350
Score = 23.4 bits (48), Expect = 4.2
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +2
Query: 47 RRLSYNTKSNQRRIVRTPGGRLVYQYVK 130
R+LSYN +QR +TP + + +K
Sbjct: 103 RQLSYNENLDQRSFSKTPNKHIEVKNLK 130
>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
Air1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 23.0 bits (47), Expect = 5.5
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +2
Query: 44 RRRLSYNTKSNQRRIVRTPGGRLVYQYVKKP 136
RR + N KS+++R PG L + KP
Sbjct: 244 RREQNRNQKSSKQRPFHKPGNSLASRLGSKP 274
>SPCC1322.02 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 351
Score = 23.0 bits (47), Expect = 5.5
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +2
Query: 71 SNQRRIVRTPGGRLVYQYVKK 133
SN R+PGG+ +Y Y+ K
Sbjct: 290 SNISTFFRSPGGKKLYHYLWK 310
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 23.0 bits (47), Expect = 5.5
Identities = 8/28 (28%), Positives = 17/28 (60%)
Frame = +1
Query: 16 LQNGAAAYIQTTFVLQHKVKPKENSTNS 99
L+NGA ++ T+V ++K + + +S
Sbjct: 1147 LKNGAEGWVPATYVTEYKGSTPQTTASS 1174
>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 836
Score = 22.2 bits (45), Expect = 9.6
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +2
Query: 56 SYNTKSNQRRIVRTPGGRL 112
SY++ S RR+ R PG ++
Sbjct: 357 SYSSASTLRRLPRAPGSKV 375
>SPBC1539.09c |trp1||anthranilate synthase component
II|Schizosaccharomyces pombe|chr 2|||Manual
Length = 759
Score = 22.2 bits (45), Expect = 9.6
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +1
Query: 7 GKKLQNGAAAYIQTTFVLQHKVKPK 81
GKK+ AA++I ++VL + PK
Sbjct: 694 GKKVDWEAASFIPVSYVLAGGLTPK 718
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 22.2 bits (45), Expect = 9.6
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -2
Query: 116 IPSDLQEFVLFSFGL 72
IPSDL E+V+ +F L
Sbjct: 784 IPSDLSEYVVTAFQL 798
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 600,200
Number of Sequences: 5004
Number of extensions: 7564
Number of successful extensions: 28
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 2,362,478
effective HSP length: 26
effective length of database: 2,232,374
effective search space used: 42415106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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