Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_A21
         (138 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0790 - 21214282-21214369,21214455-21214564,21215478-212155...    66   5e-12
08_01_0372 + 3286861-3286939,3287220-3287299,3289041-3289150,328...    66   5e-12
09_04_0106 - 14636773-14636863,14636948-14637057,14638107-146381...    64   1e-11
06_01_0485 - 3444240-3444398,3444507-3444572,3444644-3444724,344...    27   2.8  
02_05_0864 - 32319266-32319517,32320139-32320767,32321106-323211...    25   8.5  

>08_02_0790 -
           21214282-21214369,21214455-21214564,21215478-21215557,
           21215659-21215737
          Length = 118

 Score = 65.7 bits (153), Expect = 5e-12
 Identities = 29/37 (78%), Positives = 33/37 (89%)
 Frame = +2

Query: 23  MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKK 133
           MVQRLT+R+R SY TKSNQ R+V+TPGGRLVYQY KK
Sbjct: 1   MVQRLTYRKRHSYATKSNQTRVVKTPGGRLVYQYTKK 37


>08_01_0372 +
           3286861-3286939,3287220-3287299,3289041-3289150,
           3289224-3289311
          Length = 118

 Score = 65.7 bits (153), Expect = 5e-12
 Identities = 29/37 (78%), Positives = 33/37 (89%)
 Frame = +2

Query: 23  MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKK 133
           MVQRLT+R+R SY TKSNQ R+V+TPGGRLVYQY KK
Sbjct: 1   MVQRLTYRKRHSYATKSNQTRVVKTPGGRLVYQYTKK 37


>09_04_0106 -
           14636773-14636863,14636948-14637057,14638107-14638186,
           14638302-14638380
          Length = 119

 Score = 64.5 bits (150), Expect = 1e-11
 Identities = 28/37 (75%), Positives = 33/37 (89%)
 Frame = +2

Query: 23  MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKK 133
           MVQRLT+R+R SY TKSNQ R+V+TPGG+LVYQY KK
Sbjct: 1   MVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKK 37


>06_01_0485 - 3444240-3444398,3444507-3444572,3444644-3444724,
            3444823-3444900,3444980-3445075,3445363-3445405,
            3445498-3445571,3445693-3445781,3445887-3445935,
            3446171-3446227,3446309-3446425,3448633-3448698,
            3449140-3449196,3449271-3449363,3449515-3449662,
            3449753-3449902,3449979-3450181,3450319-3450438,
            3450530-3450694,3450784-3450870,3450951-3451100,
            3451225-3451365,3451399-3451569,3452015-3452091,
            3452175-3452415,3452495-3452758,3452913-3453000,
            3453099-3453481
          Length = 1170

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 22   NGAAAYIQTTFVLQHKVKPKENSTNSWRSLGIPV 123
            +GAA +IQT   L  K +  + +T  W  +GI +
Sbjct: 1120 SGAAEHIQTGTNLLQKARFLQKNTRKWTCIGIVI 1153


>02_05_0864 -
           32319266-32319517,32320139-32320767,32321106-32321139,
           32321234-32321427,32322044-32322383
          Length = 482

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +1

Query: 19  QNGAAAYIQTTFVLQHKVKPKENSTNSWRS 108
           +NG + ++  T  LQ KVK  + S+ ++RS
Sbjct: 99  ENGGSVFMLITNALQGKVKMPDKSSINYRS 128


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,961,643
Number of Sequences: 37544
Number of extensions: 49672
Number of successful extensions: 138
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 14,793,348
effective HSP length: 26
effective length of database: 13,817,204
effective search space used: 262526876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)