Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_A19
         (505 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|...    29   0.52 
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos...    26   2.8  
SPAC17G8.10c |dma1||mitotic spindle checkpoint protein Dma1|Schi...    26   3.7  
SPAC15A10.02 |taf12||transcription factor TFIID complex subunit ...    25   8.5  

>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 612

 Score = 28.7 bits (61), Expect = 0.52
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -3

Query: 365 SPSSASGTFLGAITVSTPSEDSRDSTVSGVQP 270
           +PS ASGT  G I V    EDS D+++  ++P
Sbjct: 300 TPSFASGTENGVINVWRLDEDSNDNSMGIIKP 331


>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 17/54 (31%), Positives = 28/54 (51%)
 Frame = -3

Query: 431 SPLAWSFNSLRTGPVCAMGTFRSPSSASGTFLGAITVSTPSEDSRDSTVSGVQP 270
           +P+++SF SLR G      +  + SS S +   + ++S+ SE   DS  S   P
Sbjct: 59  TPISYSFRSLRRGHTSGHASEHTSSSRS-SHDESDSMSSSSESDSDSVSSESNP 111


>SPAC17G8.10c |dma1||mitotic spindle checkpoint protein
           Dma1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 267

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -3

Query: 356 SASGTFLGAITVSTPSEDSRDSTVS 282
           S+SGTFL  + +S PS+ S+   +S
Sbjct: 105 SSSGTFLNHVRLSPPSKTSKPYPIS 129


>SPAC15A10.02 |taf12||transcription factor TFIID complex subunit A
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 450

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = -3

Query: 368 RSPSSASGTFLGAITVSTPSEDSRDSTVSGVQ 273
           R  SSA+G   G  T    S D+R ST S  Q
Sbjct: 192 RQASSANGNNTGTSTPVNASTDTRKSTASTPQ 223


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,961,430
Number of Sequences: 5004
Number of extensions: 37270
Number of successful extensions: 109
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)