Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_A18
(470 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex ... 106 2e-24
SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase |Schiz... 55 5e-09
SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces... 52 3e-08
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi... 27 1.1
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 27 1.4
SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein L25|S... 26 2.5
SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|ch... 26 2.5
SPAC23H4.10c |thi4||thiamine-phosphate dipyrophosphorylase/hydro... 26 2.5
SPCC1235.12c |mug146||meiotically upregulated gene Mug46|Schizos... 25 5.8
SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca... 25 5.8
SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomy... 25 5.8
SPBC2A9.08c |sec22||SNARE Sec22|Schizosaccharomyces pombe|chr 2|... 25 5.8
SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog Mde5|S... 25 5.8
SPBC17D11.07c |rpn2||19S proteasome regulatory subunit Rpn2|Schi... 25 7.7
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar... 25 7.7
SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces... 25 7.7
>SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex
subunit |Schizosaccharomyces pombe|chr 2|||Manual
Length = 509
Score = 106 bits (254), Expect = 2e-24
Identities = 59/156 (37%), Positives = 90/156 (57%), Gaps = 2/156 (1%)
Frame = +1
Query: 7 GKHGRGITEYLDIPRHEIDLIVGSLEHSFASIGGFCAGSHFIVEHQRLSGLGYCFSASLP 186
G+ G+G+TE+ +P ++++I+GSL S A GGFCAGS +VEHQRLSG+ Y +SA+LP
Sbjct: 310 GRTGKGLTEHFGVPPTDVEIIIGSLTTSLAGGGGFCAGSELMVEHQRLSGMAYIYSAALP 369
Query: 187 PMLTQAAISALDILEQK-PTVIDELNTISKQLHNALSEQLKNFTFRGDEISPIKHIYLK- 360
L AA A+ IL + +++++L + S H LS K F D SPI H+ K
Sbjct: 370 ASLAVAAYEAISILSRDGGSMLNDLRSKSALFHAKLSRN-KFFETSSDIESPIIHLRFKD 428
Query: 361 KDLTDRLKHSYLRNIANYCLEKGVAFAVSAYLRDVE 468
KD++ + L I C+ +G A + + +E
Sbjct: 429 KDISHDKQVFLLEEIVELCIAEGFLIARAKRVESLE 464
>SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 603
Score = 55.2 bits (127), Expect = 5e-09
Identities = 35/124 (28%), Positives = 62/124 (50%), Gaps = 5/124 (4%)
Frame = +1
Query: 1 ARGKHGRGITEYLDIPRHEIDLIVGSLEHSFASIGGFCAGSHFIVEHQRLSGLGYCFSAS 180
A G G GI +Y I +D+++G+ SF + GG+ + + I+ R++ GY ++ S
Sbjct: 370 AIGPRGGGICDYFGISTDHVDILMGTFTKSFGAAGGYISATPNIINKLRVTNPGYVYAES 429
Query: 181 L-PPMLTQAAISALDILEQKPTVIDELNTISKQLHNA----LSEQLKNFTFRGDEISPIK 345
+ P +L Q S L+I++ PT L I + N+ L + F G++ SP+
Sbjct: 430 MSPAVLAQIKSSFLEIMDNSPTSAG-LERIERLAFNSRYIRLGLKRLGFIIFGNDDSPVV 488
Query: 346 HIYL 357
+ L
Sbjct: 489 PLLL 492
>SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 558
Score = 52.4 bits (120), Expect = 3e-08
Identities = 27/97 (27%), Positives = 51/97 (52%)
Frame = +1
Query: 7 GKHGRGITEYLDIPRHEIDLIVGSLEHSFASIGGFCAGSHFIVEHQRLSGLGYCFSASLP 186
G G G+ E +D+I G+L S+ +GG+ A S +V+ R G+ F+ SLP
Sbjct: 351 GPRGAGVAEETPGLLSRVDIITGTLAKSYGCVGGYIAASSTLVDMIRSLAPGFIFTTSLP 410
Query: 187 PMLTQAAISALDILEQKPTVIDELNTISKQLHNALSE 297
P + A++A++ L+ ++ + +++ +LSE
Sbjct: 411 PHVMVGALTAVEHLKVSNVEREQQRSAVRRVKQSLSE 447
>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
Air1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 27.5 bits (58), Expect = 1.1
Identities = 14/49 (28%), Positives = 20/49 (40%)
Frame = +3
Query: 105 GLLRRFPLHC*TPETLRPRLLFQRFASTDVDSSCDISFRHFGTKTHRYR 251
GLL C P PR+ T S+C + +R++ K H R
Sbjct: 131 GLLGHIAARCSEPRKRGPRVCRTCHTDTHTSSTCPLIWRYYVEKEHPVR 179
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 27.1 bits (57), Expect = 1.4
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +1
Query: 220 DILEQKPTVIDELNTISKQLHNALSEQLKN 309
D+ QK TV +++ K+ N LSEQ+KN
Sbjct: 562 DVEIQKQTVQYQISNAVKENSNTLSEQIKN 591
>SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein
L25|Schizosaccharomyces pombe|chr 2|||Manual
Length = 141
Score = 26.2 bits (55), Expect = 2.5
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = -2
Query: 112 RSPRYLRTNVPETRLLNQSRVVVYP 38
R P+Y R +VP L++ +++V P
Sbjct: 41 RKPKYARKSVPHASRLDEYKIIVNP 65
>SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 658
Score = 26.2 bits (55), Expect = 2.5
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +2
Query: 227 WNKNPPL*MS*IPFQNSCIMRSQSNLKTSHSAVT 328
W K+ L IPF N ++RS + L H VT
Sbjct: 12 WTKHLRLREFKIPFPNRLVVRSLNQLSVHHEKVT 45
>SPAC23H4.10c |thi4||thiamine-phosphate
dipyrophosphorylase/hydroxyethylthiazole kinase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 518
Score = 26.2 bits (55), Expect = 2.5
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Frame = +1
Query: 184 PPMLTQAAISAL---DILEQKPTVIDELNTISKQLHNALSEQLKNFT 315
PP QA S D+L Q P + +L + +H+ + KNF+
Sbjct: 222 PPCFAQARSSLTTPKDLLNQIPAALQKLKDFTPLIHHLTNAVAKNFS 268
>SPCC1235.12c |mug146||meiotically upregulated gene
Mug46|Schizosaccharomyces pombe|chr 3|||Manual
Length = 311
Score = 25.0 bits (52), Expect = 5.8
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -2
Query: 406 QCSSDTNASAYRLDPSSDKCVLSVKSRHR 320
+C SDT++S Y D +S+ C + S ++
Sbjct: 152 KCDSDTDSSTYFGDSASETCSSASNSLYK 180
>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
cancers-1 homolog 2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 676
Score = 25.0 bits (52), Expect = 5.8
Identities = 12/48 (25%), Positives = 29/48 (60%)
Frame = +1
Query: 292 SEQLKNFTFRGDEISPIKHIYLKKDLTDRLKHSYLRNIANYCLEKGVA 435
+++L NF + + + I++K + ++SY+ ++A YCL++ V+
Sbjct: 369 TDELVNFKSSNEMMMNLLFIHVK--YSGDTENSYMSSLAGYCLQQLVS 414
>SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 247
Score = 25.0 bits (52), Expect = 5.8
Identities = 13/58 (22%), Positives = 24/58 (41%)
Frame = +1
Query: 52 HEIDLIVGSLEHSFASIGGFCAGSHFIVEHQRLSGLGYCFSASLPPMLTQAAISALDI 225
H ++ + H +I G A + I+EH R+ + F+ P + S D+
Sbjct: 62 HSVEKLFEIDSHIGCAISGLTADARTIIEHARVQTQNHRFTYDEPQGIESTTQSICDL 119
>SPBC2A9.08c |sec22||SNARE Sec22|Schizosaccharomyces pombe|chr
2|||Manual
Length = 209
Score = 25.0 bits (52), Expect = 5.8
Identities = 8/29 (27%), Positives = 19/29 (65%)
Frame = +1
Query: 247 IDELNTISKQLHNALSEQLKNFTFRGDEI 333
+D+LNT K + +++ +++ +RGD +
Sbjct: 128 LDKLNTELKDVTRVMTKNIEDLLYRGDSL 156
>SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog
Mde5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 25.0 bits (52), Expect = 5.8
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = +1
Query: 238 PTVIDELNTISKQLHNALSEQLKNFTFRGDEISPIKHI 351
P + E I + L+N + +Q+K F G + KH+
Sbjct: 194 PDIDTENPQIIETLYNFIHDQVKQFKIDGLRVDATKHV 231
>SPBC17D11.07c |rpn2||19S proteasome regulatory subunit
Rpn2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 965
Score = 24.6 bits (51), Expect = 7.7
Identities = 12/21 (57%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Frame = +1
Query: 13 HGRGITEYL-DIPRHEIDLIV 72
HGRG+TEYL + +H D IV
Sbjct: 436 HGRGVTEYLREQLKHTEDEIV 456
>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 988
Score = 24.6 bits (51), Expect = 7.7
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 132 C*TPETLRPRLLFQRFASTDVD 197
C TPE + P +L ++ S DVD
Sbjct: 825 CGTPEFMAPEILLEQQYSKDVD 846
>SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 403
Score = 24.6 bits (51), Expect = 7.7
Identities = 7/20 (35%), Positives = 15/20 (75%)
Frame = +1
Query: 367 LTDRLKHSYLRNIANYCLEK 426
L ++++H+Y +N+ N CL +
Sbjct: 334 LNEKVEHTYTQNVHNACLRE 353
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,960,089
Number of Sequences: 5004
Number of extensions: 38462
Number of successful extensions: 129
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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