Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_A17
(577 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 123 2e-29
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 106 2e-24
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 97 2e-21
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 87 2e-18
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 73 2e-14
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 73 4e-14
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 73 4e-14
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 64 1e-11
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 58 1e-09
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 46 4e-06
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 42 6e-05
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 42 9e-05
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 40 3e-04
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom... 38 0.001
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 38 0.001
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 36 0.004
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 31 0.16
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p... 30 0.21
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 28 0.85
SPBC691.05c ||SPBP22H7.01c|membrane transporter |Schizosaccharom... 27 2.0
SPBC1604.03c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 27 2.6
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch... 26 4.5
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha... 25 6.0
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 123 bits (296), Expect = 2e-29
Identities = 59/128 (46%), Positives = 86/128 (67%)
Frame = +3
Query: 114 SLRSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITHSILQRSNGIYTNV*YY*RRE 293
S +T+GIDFK++T+ KR+KLQIWDTAGQER+RTIT + + + GI ++
Sbjct: 37 SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLLYDVTDKKS 96
Query: 294 FQQCTSIWVTQIKTYSWDNAQVILVGNKCDMEEERVVSAERGRQLADQLGVEFYETSAKE 473
F + W + ++ ++ +N IL+GNKCD E++R VS E+G+ LAD+LGV+F E SAK
Sbjct: 97 FDNVRT-WFSNVEQHASENVYKILIGNKCDCEDQRQVSFEQGQALADELGVKFLEASAKT 155
Query: 474 NINVKTVF 497
N+NV F
Sbjct: 156 NVNVDEAF 163
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 106 bits (255), Expect = 2e-24
Identities = 57/146 (39%), Positives = 85/146 (58%)
Frame = +3
Query: 102 THHLSLRSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITHSILQRSNGIYTNV*YY 281
T+ S ST+G+DFK++T K VKLQIWDTAGQER+RTIT S + ++GI
Sbjct: 32 TYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 91
Query: 282 *RREFQQCTSIWVTQIKTYSWDNAQVILVGNKCDMEEERVVSAERGRQLADQLGVEFYET 461
+ F W+ +I Y+ + +LVGNK DM +++VV ++ AD L + F ET
Sbjct: 92 DQDSFNNVKQ-WLQEIDRYAVEGVNRLLVGNKSDMVDKKVVEYSVAKEFADSLNIPFLET 150
Query: 462 SAKENINVKTVFERLVDIICDKMSES 539
SAK++ NV+ F + I ++M +
Sbjct: 151 SAKDSTNVEQAFLTMSRQIKERMGNN 176
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 97.1 bits (231), Expect = 2e-21
Identities = 51/149 (34%), Positives = 84/149 (56%)
Frame = +3
Query: 72 TRVFYFDMPTTHHLSLRSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITHSILQRS 251
TR Y T+ ++T+GIDF KT++ D+ V+LQ+WDTAGQER+R++ S ++ S
Sbjct: 29 TRFMYDQFDNTY----QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS 84
Query: 252 NGIYTNV*YY*RREFQQCTSIWVTQIKTYSWDNAQVILVGNKCDMEEERVVSAERGRQLA 431
+ F T W+ ++ D+ ++LVGNK D+ ++R V+ E G + A
Sbjct: 85 SVAIIVYDITNHNSFVN-TEKWIEDVRAERGDDVIIVLVGNKTDLADKRQVTQEEGEKKA 143
Query: 432 DQLGVEFYETSAKENINVKTVFERLVDII 518
+L + ETSAK NVK +F ++ ++
Sbjct: 144 KELKIMHMETSAKAGHNVKLLFRKIAQML 172
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 87.0 bits (206), Expect = 2e-18
Identities = 43/134 (32%), Positives = 75/134 (55%)
Frame = +3
Query: 108 HLSLRSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITHSILQRSNGIYTNV*YY*R 287
++ +ST+G++F + + +K++K QIWDTAGQERYR IT + + + G +
Sbjct: 36 NIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDITKQ 95
Query: 288 REFQQCTSIWVTQIKTYSWDNAQVILVGNKCDMEEERVVSAERGRQLADQLGVEFYETSA 467
F W+ +++ ++ N ++LVGNK D+ R VS E + A + + F ETSA
Sbjct: 96 SSFDN-VGRWLKELREHADSNIVIMLVGNKTDLLHLRAVSTEEAQAFAAENNLSFIETSA 154
Query: 468 KENINVKTVFERLV 509
+ NV+ F+ ++
Sbjct: 155 MDASNVEEAFQTVL 168
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 73.3 bits (172), Expect = 2e-14
Identities = 46/142 (32%), Positives = 76/142 (53%), Gaps = 5/142 (3%)
Frame = +3
Query: 120 RSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITHSILQRSNGIYTNV*YY*RREFQ 299
++T+G DF K V DK V LQ+WDTAGQER++++ + + ++ + F+
Sbjct: 38 KATIGADFLTKEVLVDDKVVTLQLWDTAGQERFQSLGVAFYRGADCCVLVYDVNNSKSFE 97
Query: 300 QCTS---IWVTQIKTYSWDNAQVILVGNKCDMEEE-RVVSAERGRQLADQLG-VEFYETS 464
S ++ Q + + IL+GNK D+EE+ R+VS + G + ++ETS
Sbjct: 98 TLDSWRDEFLIQASPSNPETFPFILLGNKVDVEEQKRMVSKSKALAFCQARGEIPYFETS 157
Query: 465 AKENINVKTVFERLVDIICDKM 530
AKE INV+ FE + + + M
Sbjct: 158 AKEAINVQEAFETVAKLALENM 179
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 72.5 bits (170), Expect = 4e-14
Identities = 42/140 (30%), Positives = 74/140 (52%), Gaps = 5/140 (3%)
Frame = +3
Query: 126 TVGIDFKVKTVF----RHDKRVKLQIWDTAGQERYRTITHSILQRSNGIYTNV*YY*RRE 293
TVGIDF + + KR+KLQIWDTAGQE++R++ + + + G +
Sbjct: 41 TVGIDFASRIISVGMGNQQKRIKLQIWDTAGQEKFRSVARNYYRGAAGAVLVYDVTNKDS 100
Query: 294 FQQCTSIWVTQIKTYSWDNAQVILVGNKCDMEEERVVSAERGRQLADQLGV-EFYETSAK 470
F++ +S W++ I+ + V+L G+K D++ +R VS E + + + +ETS+
Sbjct: 101 FEELSS-WLSDIRAMAPSTICVVLAGSKSDLQNQRQVSTEEAAEFCSEKHISSAHETSSY 159
Query: 471 ENINVKTVFERLVDIICDKM 530
NV+ F +V I ++
Sbjct: 160 TGSNVEECFLSVVSTIITRI 179
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 72.5 bits (170), Expect = 4e-14
Identities = 40/112 (35%), Positives = 56/112 (50%)
Frame = +3
Query: 183 LQIWDTAGQERYRTITHSILQRSNGIYTNV*YY*RREFQQCTSIWVTQIKTYSWDNAQVI 362
L + DTAGQE Y + ++ G R F + ++ + ++ D V+
Sbjct: 58 LDVLDTAGQEEYSAMREQYMRTGEGFLLVYNITSRSSFDEISTFYQQILRVKDKDTFPVV 117
Query: 363 LVGNKCDMEEERVVSAERGRQLADQLGVEFYETSAKENINVKTVFERLVDII 518
LV NKCD+E ERVVS G QLA + + ETSAK +NV+ F LV I
Sbjct: 118 LVANKCDLEAERVVSRAEGEQLAKSMHCLYVETSAKLRLNVEEAFYSLVRTI 169
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 64.5 bits (150), Expect = 1e-11
Identities = 39/127 (30%), Positives = 64/127 (50%), Gaps = 2/127 (1%)
Frame = +3
Query: 123 STVGIDFKVKTV-FRHDKRVKLQIWDTAGQERYRTITHSILQRSNGIYTNV*YY*RREFQ 299
ST+G F +T+ + VKL+IWDTAGQERY+++ + +N +
Sbjct: 45 STIGAAFLTQTLPIDENTSVKLEIWDTAGQERYKSLAPMYYRNANCAIVVYDITQAASLE 104
Query: 300 QCTSIWVTQIKTYSWDNAQVILVGNKCDM-EEERVVSAERGRQLADQLGVEFYETSAKEN 476
+ S W+ +++ + + + L GNK D+ +E R V A + + F+ETSAK
Sbjct: 105 KAKS-WIKELQRQAPEGIVIALAGNKLDLAQERRAVEKADAEAYAAEANLLFFETSAKTA 163
Query: 477 INVKTVF 497
NV +F
Sbjct: 164 ENVNELF 170
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 57.6 bits (133), Expect = 1e-09
Identities = 47/160 (29%), Positives = 74/160 (46%), Gaps = 11/160 (6%)
Frame = +3
Query: 120 RSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITHSILQRSNGIYTNV*YY*RREFQ 299
++T+G DF K V DK V LQ+WDTAGQER++++ + + ++ + F
Sbjct: 38 KATIGADFLTKDVVVDDKLVTLQLWDTAGQERFQSLGMAFYRGADCCVIVYNVNNSKSFD 97
Query: 300 QCTSIWVTQIKTYSWDNA--QVILVGNKCDME-EERVVSAERGRQLADQ---LGVEFYET 461
+ + S D I+VGN+ D + +R VS R + +E
Sbjct: 98 SVENWRQEFLYQTSQDECAFPFIIVGNQIDKDASKRAVSLHRALDYCKSKHGSNMIHFEA 157
Query: 462 SAKENINVKTVFERLVDIICDKMSESLD-----SEPAMLA 566
SAKEN NV +FE + + + S D SEP +L+
Sbjct: 158 SAKENTNVTDLFETVSRLALENESSRDDFVNDFSEPLLLS 197
Score = 31.1 bits (67), Expect = 0.12
Identities = 12/28 (42%), Positives = 21/28 (75%)
Frame = +1
Query: 226 LPTAYYRGAMGFILMYDITNEESFNSVQ 309
L A+YRGA +++Y++ N +SF+SV+
Sbjct: 73 LGMAFYRGADCCVIVYNVNNSKSFDSVE 100
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 46.0 bits (104), Expect = 4e-06
Identities = 34/133 (25%), Positives = 57/133 (42%), Gaps = 12/133 (9%)
Frame = +3
Query: 165 HDKRVKLQIWDTAGQERYRTITHSILQRSNGIYTNV*YY*RREFQQCTSIWVTQIKTYSW 344
+ K ++L +WDTAGQE Y + SN I T W +++ +
Sbjct: 60 NSKVIELALWDTAGQEEYDRLRPLSYPNSNVILLCFSIDCPASLNNVTEKWYPEVQHFC- 118
Query: 345 DNAQVILVGNKCDMEEER------------VVSAERGRQLADQLGVEFYETSAKENINVK 488
++LVG K D+ ++R V+ ++ + +A + + E SAKEN V
Sbjct: 119 PRTPIVLVGLKADLRKDRNATEVLRTQGLTPVTYQQAQSVALSMNAPYVECSAKENTGVN 178
Query: 489 TVFERLVDIICDK 527
VF+ V + K
Sbjct: 179 EVFQLAVGLTIKK 191
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 41.9 bits (94), Expect = 6e-05
Identities = 25/85 (29%), Positives = 39/85 (45%)
Frame = +3
Query: 171 KRVKLQIWDTAGQERYRTITHSILQRSNGIYTNV*YY*RREFQQCTSIWVTQIKTYSWDN 350
K V+L +WDTAGQE Y + +++ I + ++ W+ +I T N
Sbjct: 54 KSVQLALWDTAGQEEYERLRPMSYAKAHIILVGFAIDSPDSLENVSTKWIEEINTLC-PN 112
Query: 351 AQVILVGNKCDMEEERVVSAERGRQ 425
ILVG K D+ + V E R+
Sbjct: 113 VPFILVGMKADLRSDPVAIEEMRRR 137
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 41.5 bits (93), Expect = 9e-05
Identities = 31/126 (24%), Positives = 57/126 (45%), Gaps = 9/126 (7%)
Frame = +3
Query: 147 VKTVFRHDKRVKLQIWDTAGQERYRTITHSILQRSNGIYTNV*YY*RREFQQCTSIWVTQ 326
+ +F ++L +WDTAGQE Y + ++ I R + + W+ +
Sbjct: 51 IHDIFVDGNSIELSLWDTAGQEEYDQLRSLSYSDTHVIMICFAVDSRDSLENVITKWLPE 110
Query: 327 IKTYSWDNAQVILVGNKCDM---EEE-----RVVSAERGRQLADQL-GVEFYETSAKENI 479
+ + + +++LV KCD+ +EE +++ E G A ++ V + E SAK N
Sbjct: 111 VSS-NCPGVKLVLVALKCDLRGADEEQVDHSKIIDYEEGLAAAKKINAVRYLECSAKLNR 169
Query: 480 NVKTVF 497
V F
Sbjct: 170 GVNEAF 175
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 39.5 bits (88), Expect = 3e-04
Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 13/123 (10%)
Frame = +3
Query: 171 KRVKLQIWDTAGQERYRTITHSILQRSNGIYTNV*YY*RREFQQCTSIWVTQIKTYSWDN 350
+ ++L +WDTAGQE Y + S+ + W++++ + N
Sbjct: 52 RHIELALWDTAGQEDYDRLRPLSYPDSHVVLICFSVDAPESLDNVQEKWISEVLHFC-SN 110
Query: 351 AQVILVGNKCDM-------EE-----ERVVSAERGRQLADQLGV-EFYETSAKENINVKT 491
++LVG K D+ EE ++ ++ E G+ +A ++G ++ E SAK N V
Sbjct: 111 LPILLVGCKVDLRNDPKTIEELSKTSQKPITFEEGQVVAQKIGAYKYLECSAKLNEGVNE 170
Query: 492 VFE 500
VFE
Sbjct: 171 VFE 173
>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 37.9 bits (84), Expect = 0.001
Identities = 33/123 (26%), Positives = 56/123 (45%), Gaps = 13/123 (10%)
Frame = +3
Query: 171 KRVKLQIWDTAGQERYRTITHSILQRSNGIYTNV*YY*RREFQQCTSIWVTQIKTYSWDN 350
+ V+L +WDTAGQE Y + S+ I W++++ + +
Sbjct: 52 RHVELALWDTAGQEDYDRLRPLSYPDSHVILICFAVDSPDSLDNVQEKWISEVLHFC-SS 110
Query: 351 AQVILVGNKCDM-------EE-----ERVVSAERGRQLADQLGV-EFYETSAKENINVKT 491
++LV K D+ EE + V+ E G+ +A ++G ++ E SAK N V+
Sbjct: 111 LPILLVACKADLRNDPKIIEELSKTNQHPVTTEEGQAVAQKIGAYKYLECSAKTNEGVRE 170
Query: 492 VFE 500
VFE
Sbjct: 171 VFE 173
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 37.9 bits (84), Expect = 0.001
Identities = 29/126 (23%), Positives = 57/126 (45%), Gaps = 1/126 (0%)
Frame = +3
Query: 123 STVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITHS-ILQRSNGIYTNV*YY*RREFQ 299
+T+G++ + + +WDTAGQE+ + +Q GI R ++
Sbjct: 40 ATLGVEVHPLHFHTNFGEICFNVWDTAGQEKLGGLRDGYYIQGQCGIIM-FDVTSRITYK 98
Query: 300 QCTSIWVTQIKTYSWDNAQVILVGNKCDMEEERVVSAERGRQLADQLGVEFYETSAKENI 479
W ++ +N ++L GNK D++E +V + + + +++Y+ SAK N
Sbjct: 99 NVPHWWRDLVRV--CENIPIVLCGNKVDVKERKVKA--KAITFHRKKNLQYYDISAKSNY 154
Query: 480 NVKTVF 497
N + F
Sbjct: 155 NFEKPF 160
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 35.9 bits (79), Expect = 0.004
Identities = 29/138 (21%), Positives = 57/138 (41%), Gaps = 5/138 (3%)
Frame = +3
Query: 126 TVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITHSILQRSNGIYTNV*YY*RREFQQC 305
T+G++F KT+ + + IWD GQ + + + + I R+
Sbjct: 42 TLGVNFMEKTISIRNTEITFSIWDLGGQREFVNMLPMVCNDAVAILFMFDLS-RKSTLNS 100
Query: 306 TSIWVTQIKTYSWDNAQVILVGNKCD-----MEEERVVSAERGRQLADQLGVEFYETSAK 470
W Q + ++ A IL+G K D E++ ++ R+ A + S
Sbjct: 101 IKEWYRQARGFN-KTAVPILIGTKYDHFMTFPREDQEEITKQARRYAKAMKASLVFCSTS 159
Query: 471 ENINVKTVFERLVDIICD 524
+INV+ +F+ ++ + D
Sbjct: 160 HSINVQKIFKIVLAKVFD 177
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 30.7 bits (66), Expect = 0.16
Identities = 23/104 (22%), Positives = 43/104 (41%)
Frame = +3
Query: 135 IDFKVKTVFRHDKRVKLQIWDTAGQERYRTITHSILQRSNGIYTNV*YY*RREFQQCTSI 314
I F V+TV + + +WD GQ++ R + Q + GI V R +
Sbjct: 49 IGFNVETV--EYRNISFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRERISEAHEE 106
Query: 315 WVTQIKTYSWDNAQVILVGNKCDMEEERVVSAERGRQLADQLGV 446
+ +A +++ NK D+ +A ++ D+LG+
Sbjct: 107 LQRMLNEDELRDALLLVFANKQDLP-----NAMNAAEITDKLGL 145
>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 30.3 bits (65), Expect = 0.21
Identities = 30/132 (22%), Positives = 56/132 (42%), Gaps = 13/132 (9%)
Frame = +3
Query: 153 TVFRHDKRVKLQIWDTAGQERYRTITHSILQRSNGIYTNV*YY*RREFQQCTSIWVTQIK 332
TV D+ L ++DTAGQE Y + +++ F+ W ++
Sbjct: 43 TVMIGDEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVTSPASFENVKEKWFPEVH 102
Query: 333 TYSWDNAQVILVGNKCDMEEERVV------------SAERGRQLADQLG-VEFYETSAKE 473
+ ++VG + D+ ++ V + E+G +LA +LG V++ E SA
Sbjct: 103 -HHCPGVPCLIVGTQIDLRDDPSVQQKLARQHQHPLTHEQGERLARELGAVKYVECSALT 161
Query: 474 NINVKTVFERLV 509
+K VF+ +
Sbjct: 162 QKGLKNVFDEAI 173
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 28.3 bits (60), Expect = 0.85
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +3
Query: 135 IDFKVKTVFRHDKRVKLQIWDTAGQERYRTITHSILQRSNGI 260
+ F V+TV K +K +WD GQ++ R + + G+
Sbjct: 53 VGFNVETVTY--KNIKFNVWDVGGQDKIRPLWRHYFTGTKGL 92
>SPBC691.05c ||SPBP22H7.01c|membrane transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 668
Score = 27.1 bits (57), Expect = 2.0
Identities = 25/98 (25%), Positives = 42/98 (42%), Gaps = 5/98 (5%)
Frame = -3
Query: 440 QLISKLSPAFRANHTFFLHITFIPDE-----NHLRVVPRISLDLCYPDACTLLKLSSLVI 276
QLIS + + + T LHI IP E +I D CY D + + ++
Sbjct: 449 QLISYVKKHYMSKPTRELHIQDIPSETVTLKRARSEAEKIEYD-CYNDYKDFVLMFGFLV 507
Query: 275 SYISINPIAPL*YAVGNSAVTFLSRSIPYLKLHSLIVP 162
+ I P+AP+ +++ N + S + K+ VP
Sbjct: 508 MFSPIYPLAPI-FSLVNCVLYIRSSVYRFTKMVKKPVP 544
>SPBC1604.03c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 330
Score = 26.6 bits (56), Expect = 2.6
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -3
Query: 428 KLSPAFRANHTFFLHITFIPDENHLRVVPRISLDLCY 318
++ P FRANHT F + ++N + VP + L Y
Sbjct: 18 RIVPLFRANHTRFRP---VDEKNRINAVPLLLLGCLY 51
>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 185
Score = 25.8 bits (54), Expect = 4.5
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = +1
Query: 220 ALLPTAYYRGAMGFILMYDITNEESFNSVQ 309
++L + + G G++L+Y IT++ SF V+
Sbjct: 68 SILNSKHSIGIHGYVLVYSITSKSSFEMVK 97
>SPAC8C9.06c |||mitochondrial translation regulator
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 931
Score = 25.4 bits (53), Expect = 6.0
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = -3
Query: 392 FLHITFIPDENHLRVVPRISLDLCYPDACTLLKLSSLVISYISINPI 252
++ F PD+ L PR + D+ YP + SSL+ Y S+ I
Sbjct: 658 YMSKNFQPDKRALLFNPRTANDMTYPPSL----FSSLIKEYTSLGDI 700
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,454,186
Number of Sequences: 5004
Number of extensions: 49673
Number of successful extensions: 189
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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