Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_A17
         (577 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    26   0.31 
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    26   0.31 
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    26   0.31 
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    26   0.31 
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   2.2  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      23   2.2  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    22   3.8  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    22   3.8  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   5.0  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                21   8.7  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 25.8 bits (54), Expect = 0.31
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -1

Query: 556 AGSESRLSDILSHIISTSRSNTVFTLMFSLAL 461
           AG   RLS +LS  +++  S+ +FT++  L L
Sbjct: 10  AGGGGRLSSVLSLSLTSLASSLIFTILCILTL 41


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 25.8 bits (54), Expect = 0.31
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -1

Query: 556 AGSESRLSDILSHIISTSRSNTVFTLMFSLAL 461
           AG   RLS +LS  +++  S+ +FT++  L L
Sbjct: 10  AGGGGRLSSVLSLSLTSLASSLIFTILCILTL 41


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 25.8 bits (54), Expect = 0.31
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -1

Query: 556 AGSESRLSDILSHIISTSRSNTVFTLMFSLAL 461
           AG   RLS +LS  +++  S+ +FT++  L L
Sbjct: 10  AGGGGRLSSVLSLSLTSLASSLIFTILCILTL 41


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 25.8 bits (54), Expect = 0.31
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -1

Query: 556 AGSESRLSDILSHIISTSRSNTVFTLMFSLAL 461
           AG   RLS +LS  +++  S+ +FT++  L L
Sbjct: 10  AGGGGRLSSVLSLSLTSLASSLIFTILCILTL 41


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 439 WAWNFTRP 462
           WAWNFT P
Sbjct: 659 WAWNFTIP 666


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 439 WAWNFTRP 462
           WAWNFT P
Sbjct: 659 WAWNFTIP 666


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = +2

Query: 437 TGRGILRDQC*REHQRKDRVRATSGYN 517
           T +G  RD+  RE  ++ ++ +++ YN
Sbjct: 284 TSKGRSRDRTERERSKETKIISSNNYN 310


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = +2

Query: 437 TGRGILRDQC*REHQRKDRVRATSGYN 517
           T +G  RD+  RE  ++ ++ +++ YN
Sbjct: 295 TSKGRSRDRTERERSKETKIISSNNYN 321


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +3

Query: 42  TMDPPGCRIGTRVFY 86
           T+DP GC  G   +Y
Sbjct: 401 TVDPAGCNAGPAKYY 415


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -3

Query: 239 YAVGNSAVTFLSRSIPYLKLHS 174
           Y++G  A   L R +P+  LHS
Sbjct: 238 YSLGIVAWQMLFRKLPFAGLHS 259


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,913
Number of Sequences: 438
Number of extensions: 3795
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16626408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)