Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_A16
         (267 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb...    24   3.1  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    24   3.1  
SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces ...    24   4.1  
SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II comp...    23   5.5  
SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr...    23   5.5  
SPAC630.05 |gyp7||GTPase activating protein Gyp7 |Schizosaccharo...    23   7.2  
SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1 |Schizosaccha...    23   9.6  
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    23   9.6  
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    23   9.6  
SPBC582.10c |||ATP-dependent DNA helicase Rhp16b |Schizosaccharo...    23   9.6  

>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1073

 Score = 24.2 bits (50), Expect = 3.1
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +2

Query: 8   RLNTETLVCAQTQTPPSAVDTHRLPRRIPLFDLTSRICIL 127
           +LNT +    + Q+ P + D H +P  I  F L  ++ ++
Sbjct: 538 KLNTLSNGTLELQSLPDSFDLHDVPTCITSFSLERKLLVI 577


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 24.2 bits (50), Expect = 3.1
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -1

Query: 210 PPPPPMNLVN*STNITPPG 154
           PPPPP  L+N S    P G
Sbjct: 372 PPPPPPELLNHSPKSRPLG 390


>SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 862

 Score = 23.8 bits (49), Expect = 4.1
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 53  PSAVDTHRLPRRIPLFDLTSRICIL 127
           P AVD    P+ IP  + ++ ICIL
Sbjct: 125 PEAVDLDWSPQGIPWTETSTGICIL 149


>SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II complex
            subunit Rpb2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1210

 Score = 23.4 bits (48), Expect = 5.5
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
 Frame = -2

Query: 146  RLFDYTRVYRSLMLDRIGVFA-----EVVYECRRQREESVFGR 33
            RLFD +  YR ++ D  G+ A     +  YECR  +  + F +
Sbjct: 1139 RLFDCSDAYRVIVCDICGLIAIASYKKDSYECRSCQNRTRFSQ 1181


>SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score = 23.4 bits (48), Expect = 5.5
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = +1

Query: 76  TTSANTPIRSNIKDLYTLV*SNNLSGARWCDISRLVN*IHWGG 204
           + +ANTP     K L   V     +   WC  SRLV  +H+ G
Sbjct: 109 SVAANTPAVRAAKKLSVAV-----AELAWCPKSRLVRIVHFEG 146


>SPAC630.05 |gyp7||GTPase activating protein Gyp7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 23.0 bits (47), Expect = 7.2
 Identities = 8/33 (24%), Positives = 18/33 (54%)
 Frame = -3

Query: 217 SATPPPPNEFS*LID*YHTTWHRLGYSIILEYT 119
           S+TPP P   S + + +    H L ++++  ++
Sbjct: 242 SSTPPTPRSSSSIFNPFRRALHDLSFTVLERFS 274


>SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 22.6 bits (46), Expect = 9.6
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 210 PPPPPMNLVN*STNITPP 157
           PPP P+ L++   N+ PP
Sbjct: 285 PPPMPIELLSYIINMPPP 302


>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1375

 Score = 22.6 bits (46), Expect = 9.6
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +1

Query: 79  TSANTPIRSNIKDLYTLV 132
           T + TP+RS + DL+ L+
Sbjct: 453 TVSGTPVRSEVDDLFGLL 470


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1428

 Score = 22.6 bits (46), Expect = 9.6
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +1

Query: 31  VRPNTDSSLCRRHS*TTSANTPIRSN 108
           V+P+  ++ CR       AN P++SN
Sbjct: 211 VQPSNYTTFCRMLDEPLPANNPVQSN 236


>SPBC582.10c |||ATP-dependent DNA helicase Rhp16b
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 830

 Score = 22.6 bits (46), Expect = 9.6
 Identities = 7/14 (50%), Positives = 13/14 (92%)
 Frame = +1

Query: 91  TPIRSNIKDLYTLV 132
           TP+++N+ +LY+LV
Sbjct: 414 TPLQNNVDELYSLV 427


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,185,404
Number of Sequences: 5004
Number of extensions: 21861
Number of successful extensions: 39
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 55545318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)