Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_A16
(267 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_01_0025 - 441528-444284 28 0.89
05_04_0211 + 19088656-19088965,19089911-19089987,19090964-190910... 28 0.89
02_05_1305 - 35586499-35586601,35586963-35587034,35587111-355872... 27 1.6
02_01_0139 - 1008675-1008752,1008828-1008905,1009176-1009227,100... 27 1.6
02_04_0567 - 23914330-23914461,23915016-23915136,23915954-239160... 24 2.0
07_03_1777 + 29442542-29442652,29443394-29443455,29443540-294436... 27 2.1
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 23 4.0
02_05_0930 - 32801737-32801936,32802038-32802107 26 4.8
11_01_0066 - 536281-537196,537397-537452 25 6.3
03_04_0066 + 17003276-17004067 25 6.3
12_02_0155 + 14497847-14498012,14499612-14499695,14500196-14500551 25 8.3
11_01_0567 + 4469926-4470055,4470827-4470886,4471418-4471635 25 8.3
10_01_0121 - 1493822-1494316 25 8.3
03_01_0389 + 3021849-3022136,3022237-3022753,3022835-3022988,302... 25 8.3
02_04_0199 - 20861793-20862023,20862588-20862798,20863260-208641... 25 8.3
01_07_0147 - 41474003-41474308,41474706-41474750 25 8.3
01_07_0143 - 41443030-41443335,41443733-41443777 25 8.3
>09_01_0025 - 441528-444284
Length = 918
Score = 28.3 bits (60), Expect = 0.89
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -1
Query: 255 MHSRCSSVY*CILVRPPPPPMNLV 184
+HS SS+ RPPPPP NL+
Sbjct: 121 LHSLSSSLSDSTTFRPPPPPSNLL 144
>05_04_0211 +
19088656-19088965,19089911-19089987,19090964-19091047,
19091130-19091243,19091861-19091947,19092000-19092107,
19092643-19092710,19093044-19093131,19093225-19093298,
19093454-19093817,19094024-19094070,19094154-19094235,
19095698-19095817
Length = 540
Score = 28.3 bits (60), Expect = 0.89
Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 3/29 (10%)
Frame = +2
Query: 29 VCAQTQTPPSAVDTHRLPR---RIPLFDL 106
V A+T+TP SAV R+PR +PL+D+
Sbjct: 319 VRAETETPVSAVSIRRIPRVPADMPLYDI 347
>02_05_1305 -
35586499-35586601,35586963-35587034,35587111-35587232,
35587767-35587826,35587919-35587997,35588219-35588307,
35588405-35588492,35591761-35591821,35592546-35592890,
35593094-35594351
Length = 758
Score = 27.5 bits (58), Expect = 1.6
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +3
Query: 15 TPKLWCAPKHRLLPLPSTLIDYLGEYP 95
+P L A HRL PLPST + + P
Sbjct: 33 SPSLLAAVLHRLSPLPSTALAFFRSLP 59
>02_01_0139 -
1008675-1008752,1008828-1008905,1009176-1009227,
1009369-1009437,1009594-1009652,1009757-1009828,
1009945-1010038,1010311-1010356,1010510-1010609,
1010847-1011200,1011362-1011460,1011548-1011595,
1011679-1011816
Length = 428
Score = 27.5 bits (58), Expect = 1.6
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -2
Query: 209 PPPPQ*I*LTNRLISHHLAP 150
PPPP+ L ++L HHLAP
Sbjct: 12 PPPPEVAHLVDQLQRHHLAP 31
>02_04_0567 -
23914330-23914461,23915016-23915136,23915954-23916048,
23916131-23916301,23917291-23917380,23917636-23918139
Length = 370
Score = 23.8 bits (49), Expect(2) = 2.0
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -1
Query: 210 PPPPPMNLVN*STNITPPG 154
PPPPP+ +V+ S PG
Sbjct: 52 PPPPPLEVVSPSPRWRRPG 70
Score = 21.8 bits (44), Expect(2) = 2.0
Identities = 8/17 (47%), Positives = 9/17 (52%)
Frame = -1
Query: 246 RCSSVY*CILVRPPPPP 196
RC + C PPPPP
Sbjct: 30 RCPFTFLCPPPPPPPPP 46
>07_03_1777 +
29442542-29442652,29443394-29443455,29443540-29443681,
29444043-29444261,29444374-29444440,29444883-29445288,
29445669-29445816,29445903-29446063,29446320-29446419,
29446522-29446596,29446677-29446811,29446921-29447013,
29447475-29447657,29447738-29447842,29448614-29448772,
29449142-29449186,29449296-29449517,29449775-29449881,
29449971-29450027,29450132-29450213,29450291-29450455
Length = 947
Score = 27.1 bits (57), Expect = 2.1
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +3
Query: 21 KLWCAPKHRLLPLPSTLIDYLGEYPYSI*HQGSVYSSIIE 140
KLW K L L+ G +PYS HQ +V +I++
Sbjct: 210 KLWDFAKRACTKLMKVLVTLQGRHPYSFVHQ-AVLPAIVD 248
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 22.6 bits (46), Expect(2) = 4.0
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -1
Query: 210 PPPPPMNLVN*STNITPP 157
PPPPP L N S PP
Sbjct: 605 PPPPPPILPNRSVPPPPP 622
Score = 21.8 bits (44), Expect(2) = 4.0
Identities = 6/10 (60%), Positives = 8/10 (80%)
Frame = -1
Query: 225 CILVRPPPPP 196
C++ PPPPP
Sbjct: 597 CLVPSPPPPP 606
>02_05_0930 - 32801737-32801936,32802038-32802107
Length = 89
Score = 25.8 bits (54), Expect = 4.8
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = -1
Query: 249 SRCSSVY*CILVRPPPPPMNLVN 181
++C Y C + PPPPP N
Sbjct: 67 NKCKCDYSCAFLPPPPPPATARN 89
>11_01_0066 - 536281-537196,537397-537452
Length = 323
Score = 25.4 bits (53), Expect = 6.3
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = -1
Query: 216 VRPPPPPMNLVN*STNITPPGTA 148
VRPPPP T TPP TA
Sbjct: 262 VRPPPPLPRATVTPTPTTPPSTA 284
>03_04_0066 + 17003276-17004067
Length = 263
Score = 25.4 bits (53), Expect = 6.3
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = +1
Query: 76 TTSANTPIRSNIKDLYTLV*SNNLSGARWCDISRLVN*IHWGGGGSH 216
TT+ N N+ + S+ SG D++ +H GGGG H
Sbjct: 112 TTTYNYNDDDNLPKMQVPSSSSTSSGRASIDVAAAAATVHGGGGGRH 158
>12_02_0155 + 14497847-14498012,14499612-14499695,14500196-14500551
Length = 201
Score = 25.0 bits (52), Expect = 8.3
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = -1
Query: 216 VRPPPPPMNLVN*STNITPPGTA*VIRL 133
+RPPPPP T TPP A +RL
Sbjct: 119 LRPPPPPQ-----ETQPTPPSPATTMRL 141
>11_01_0567 + 4469926-4470055,4470827-4470886,4471418-4471635
Length = 135
Score = 25.0 bits (52), Expect = 8.3
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -1
Query: 225 CILVRPPPPPMNLVN*STNITPP 157
C RPPPPP+ + +T + P
Sbjct: 11 CATARPPPPPVPTSHATTIVVDP 33
>10_01_0121 - 1493822-1494316
Length = 164
Score = 25.0 bits (52), Expect = 8.3
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +3
Query: 42 HRLLPLPSTLIDYLGEYPYSI 104
HRL P P+T I + G+ P ++
Sbjct: 90 HRLCPAPNTKIQWWGDKPSAV 110
>03_01_0389 +
3021849-3022136,3022237-3022753,3022835-3022988,
3023076-3023166,3024556-3024627,3026366-3026689
Length = 481
Score = 25.0 bits (52), Expect = 8.3
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -1
Query: 222 ILVRPPPPPMNLVN*STNITPP 157
++ PPPP VN +T TPP
Sbjct: 239 VVTAAPPPPPPFVNPATPQTPP 260
>02_04_0199 -
20861793-20862023,20862588-20862798,20863260-20864142,
20864363-20865608
Length = 856
Score = 25.0 bits (52), Expect = 8.3
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -1
Query: 216 VRPPPPPMNLVN*STNITPPGT 151
VRPP PP + ST TPP T
Sbjct: 466 VRPPLPPSPPLLSSTTATPPPT 487
>01_07_0147 - 41474003-41474308,41474706-41474750
Length = 116
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 8 RLNTETLVCAQTQTPPSAVDTHRLP 82
R+NT TL+C Q +P A+ LP
Sbjct: 5 RINTATLMCKQPSSPYLAIVCALLP 29
>01_07_0143 - 41443030-41443335,41443733-41443777
Length = 116
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 8 RLNTETLVCAQTQTPPSAVDTHRLP 82
R+NT TL+C Q +P A+ LP
Sbjct: 5 RINTATLMCKQPSSPYLAIVCALLP 29
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,828,389
Number of Sequences: 37544
Number of extensions: 193799
Number of successful extensions: 573
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 14,793,348
effective HSP length: 67
effective length of database: 12,277,900
effective search space used: 257835900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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