Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_A16
         (267 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39676-3|AAB37032.2|  941|Caenorhabditis elegans Hypothetical pr...    27   1.8  
Z81554-1|CAB04506.1|  838|Caenorhabditis elegans Hypothetical pr...    25   5.6  
Z68220-2|CAA92485.1|  234|Caenorhabditis elegans Hypothetical pr...    25   7.4  
U40799-9|AAA81488.2| 1292|Caenorhabditis elegans Hypothetical pr...    25   7.4  
AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal elemen...    25   7.4  
Z81137-1|CAB03469.2|  503|Caenorhabditis elegans Hypothetical pr...    25   9.7  
AF022982-3|AAB69932.1|  670|Caenorhabditis elegans Hypothetical ...    25   9.7  

>U39676-3|AAB37032.2|  941|Caenorhabditis elegans Hypothetical
           protein C23F12.2 protein.
          Length = 941

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -1

Query: 267 HIMIMHSRCSSVY*CILVRPPPPPMNLVN*STNITPP 157
           H   + ++ SS+   +   PPPPP  L   S+NI PP
Sbjct: 570 HHQTVPTQSSSIVQVVQPIPPPPP-TLAQSSSNIPPP 605


>Z81554-1|CAB04506.1|  838|Caenorhabditis elegans Hypothetical
           protein F57G4.1 protein.
          Length = 838

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +2

Query: 20  ETLVCAQTQTPPSAVDTHRLPRRIPLFDLTSRICIL 127
           E L C    TP S + T R+ + + ++     I IL
Sbjct: 2   EMLACGTNNTPSSTIKTIRISQIVEIYVTVEEISIL 37


>Z68220-2|CAA92485.1|  234|Caenorhabditis elegans Hypothetical
           protein T20D3.2 protein.
          Length = 234

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 140 FDYTRVYRSLMLDRIGVFAEVV 75
           FDY R +R L    +G F+EVV
Sbjct: 131 FDYVRTFRGLEWMCVGGFSEVV 152


>U40799-9|AAA81488.2| 1292|Caenorhabditis elegans Hypothetical
           protein F42C5.10 protein.
          Length = 1292

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 244 MFICLLVYISATPPPPNE 191
           +F+ LL YI   PPPP E
Sbjct: 584 VFVPLLPYIPPPPPPPAE 601


>AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal element on
            autosome protein2 protein.
          Length = 1758

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 216  VRPPPPPMNLVN*STNITPPGTA 148
            + PPPPP N  + +  + PP TA
Sbjct: 1284 IMPPPPPYNQAS-AVPLNPPRTA 1305


>Z81137-1|CAB03469.2|  503|Caenorhabditis elegans Hypothetical
           protein W02D9.1 protein.
          Length = 503

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
 Frame = +2

Query: 2   GTRLNTETLVCAQT--QTPPSAVDTHRLPRR 88
           G R+    + CA    + PPSAVD H  P R
Sbjct: 378 GRRVAQTAMSCATIILRNPPSAVDCHGCPFR 408


>AF022982-3|AAB69932.1|  670|Caenorhabditis elegans Hypothetical
           protein T23B12.6 protein.
          Length = 670

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = -1

Query: 243 CSSVY*CILVRPPPPPM-NLVN 181
           C SVY C ++ PP  P+ NL N
Sbjct: 121 CGSVYFCGMIPPPDMPLENLPN 142


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,929,611
Number of Sequences: 27780
Number of extensions: 137375
Number of successful extensions: 362
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 361
length of database: 12,740,198
effective HSP length: 67
effective length of database: 10,878,938
effective search space used: 228457698
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)