Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_A16
         (267 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    21   2.6  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    21   3.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              20   4.6  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    19   8.0  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    19   8.0  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    19   8.0  

>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 21.0 bits (42), Expect = 2.6
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +2

Query: 77  LPRRIPLFDLTSRICI 124
           +  R PLF    RICI
Sbjct: 316 MENRFPLFTTVHRICI 331


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 20.6 bits (41), Expect = 3.5
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +1

Query: 16  HRNSGVRPNTDS 51
           HR+S + PN DS
Sbjct: 404 HRDSAIYPNPDS 415


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.2 bits (40), Expect = 4.6
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = -1

Query: 210  PPPPPMN 190
            PPPPP N
Sbjct: 1860 PPPPPRN 1866


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 19.4 bits (38), Expect = 8.0
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = -1

Query: 225 CILVRPPPPPMNLVN*STNITPPGTA 148
           C++  PP PP+ L     +++  G A
Sbjct: 434 CLIHGPPLPPLPLHTECEDLSVSGEA 459


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 19.4 bits (38), Expect = 8.0
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = -1

Query: 225 CILVRPPPPPMNLVN*STNITPPGTA 148
           C++  PP PP+ L     +++  G A
Sbjct: 434 CLIHGPPLPPLPLHTECEDLSVSGEA 459


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 19.4 bits (38), Expect = 8.0
 Identities = 6/19 (31%), Positives = 10/19 (52%)
 Frame = -2

Query: 74  YECRRQREESVFGRTPEFR 18
           Y C R+RE+  +     +R
Sbjct: 272 YSCSREREQKSYKNENSYR 290


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,997
Number of Sequences: 438
Number of extensions: 1889
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  5012760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)